Experiment: Plant outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04040 and ABID97_RS04045 are separated by 0 nucleotides ABID97_RS04045 and ABID97_RS04050 are separated by 91 nucleotides ABID97_RS04050 and ABID97_RS04055 are separated by 73 nucleotides
ABID97_RS04040: ABID97_RS04040 - (2Fe-2S)-binding protein, at 829,395 to 829,700
_RS04040
ABID97_RS04045: ABID97_RS04045 - ABC transporter permease, at 829,701 to 830,495
_RS04045
ABID97_RS04050: ABID97_RS04050 - ABC transporter permease, at 830,587 to 831,447
_RS04050
ABID97_RS04055: ABID97_RS04055 - ABC transporter ATP-binding protein, at 831,521 to 832,609
_RS04055
Position (kb) 830
831
832 Strain fitness (log2 ratio) -1
0
1
2 at 829.683 kb on + strand at 829.703 kb on - strand at 829.735 kb on + strand at 829.828 kb on + strand, within ABID97_RS04045 at 829.828 kb on + strand, within ABID97_RS04045 at 829.828 kb on + strand, within ABID97_RS04045 at 829.828 kb on + strand, within ABID97_RS04045 at 829.828 kb on + strand, within ABID97_RS04045 at 829.828 kb on + strand, within ABID97_RS04045 at 829.829 kb on - strand, within ABID97_RS04045 at 829.829 kb on - strand, within ABID97_RS04045 at 829.829 kb on - strand, within ABID97_RS04045 at 829.829 kb on - strand, within ABID97_RS04045 at 829.829 kb on - strand, within ABID97_RS04045 at 829.829 kb on - strand, within ABID97_RS04045 at 829.834 kb on + strand, within ABID97_RS04045 at 829.834 kb on + strand, within ABID97_RS04045 at 829.834 kb on + strand, within ABID97_RS04045 at 829.834 kb on + strand, within ABID97_RS04045 at 829.834 kb on + strand, within ABID97_RS04045 at 829.834 kb on + strand, within ABID97_RS04045 at 829.835 kb on - strand, within ABID97_RS04045 at 830.066 kb on - strand, within ABID97_RS04045 at 830.553 kb on + strand at 830.607 kb on - strand at 830.630 kb on + strand at 830.631 kb on - strand at 830.720 kb on + strand, within ABID97_RS04050 at 830.999 kb on + strand, within ABID97_RS04050 at 830.999 kb on + strand, within ABID97_RS04050 at 831.174 kb on - strand, within ABID97_RS04050 at 831.254 kb on + strand, within ABID97_RS04050 at 831.258 kb on - strand, within ABID97_RS04050 at 831.281 kb on + strand, within ABID97_RS04050 at 831.329 kb on + strand, within ABID97_RS04050 at 831.330 kb on - strand, within ABID97_RS04050 at 831.945 kb on + strand, within ABID97_RS04055 at 831.945 kb on + strand, within ABID97_RS04055 at 831.945 kb on + strand, within ABID97_RS04055 at 831.945 kb on + strand, within ABID97_RS04055 at 831.946 kb on - strand, within ABID97_RS04055 at 832.359 kb on + strand, within ABID97_RS04055 at 832.360 kb on - strand, within ABID97_RS04055
Per-strain Table
Position Strand Gene LocusTag Fraction Plant outgrowth control remove 829,683 + -0.7 829,703 - +1.1 829,735 + +0.2 829,828 + ABID97_RS04045 0.16 -0.9 829,828 + ABID97_RS04045 0.16 +0.5 829,828 + ABID97_RS04045 0.16 -0.6 829,828 + ABID97_RS04045 0.16 -0.1 829,828 + ABID97_RS04045 0.16 +1.2 829,828 + ABID97_RS04045 0.16 -0.0 829,829 - ABID97_RS04045 0.16 +1.1 829,829 - ABID97_RS04045 0.16 +0.1 829,829 - ABID97_RS04045 0.16 +0.6 829,829 - ABID97_RS04045 0.16 +0.0 829,829 - ABID97_RS04045 0.16 -0.3 829,829 - ABID97_RS04045 0.16 +0.3 829,834 + ABID97_RS04045 0.17 +2.1 829,834 + ABID97_RS04045 0.17 -0.0 829,834 + ABID97_RS04045 0.17 +1.1 829,834 + ABID97_RS04045 0.17 -0.7 829,834 + ABID97_RS04045 0.17 -0.8 829,834 + ABID97_RS04045 0.17 +0.6 829,835 - ABID97_RS04045 0.17 -0.3 830,066 - ABID97_RS04045 0.46 -0.5 830,553 + -0.3 830,607 - +0.4 830,630 + +0.5 830,631 - -0.0 830,720 + ABID97_RS04050 0.15 -0.0 830,999 + ABID97_RS04050 0.48 -1.3 830,999 + ABID97_RS04050 0.48 -1.7 831,174 - ABID97_RS04050 0.68 +0.1 831,254 + ABID97_RS04050 0.77 +1.2 831,258 - ABID97_RS04050 0.78 -0.1 831,281 + ABID97_RS04050 0.81 -0.3 831,329 + ABID97_RS04050 0.86 +0.8 831,330 - ABID97_RS04050 0.86 -0.3 831,945 + ABID97_RS04055 0.39 +0.5 831,945 + ABID97_RS04055 0.39 +0.0 831,945 + ABID97_RS04055 0.39 +0.3 831,945 + ABID97_RS04055 0.39 +0.0 831,946 - ABID97_RS04055 0.39 -0.0 832,359 + ABID97_RS04055 0.77 -1.0 832,360 - ABID97_RS04055 0.77 +0.1
Or see this region's nucleotide sequence