Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03180

Experiment: Plant outgrowth control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS03170 and ABID97_RS03175 overlap by 4 nucleotidesABID97_RS03175 and ABID97_RS03180 are separated by 99 nucleotidesABID97_RS03180 and ABID97_RS03185 overlap by 19 nucleotides ABID97_RS03170: ABID97_RS03170 - ABC transporter substrate-binding protein, at 641,566 to 642,510 _RS03170 ABID97_RS03175: ABID97_RS03175 - TetR/AcrR family transcriptional regulator, at 642,507 to 643,235 _RS03175 ABID97_RS03180: ABID97_RS03180 - acetoacetate--CoA ligase, at 643,335 to 645,341 _RS03180 ABID97_RS03185: ABID97_RS03185 - adenylate/guanylate cyclase domain-containing protein, at 645,323 to 647,140 _RS03185 Position (kb) 643 644 645 646Strain fitness (log2 ratio) -2 -1 0 1 2 3at 642.359 kb on + strand, within ABID97_RS03170at 642.360 kb on - strand, within ABID97_RS03170at 642.411 kb on - strand, within ABID97_RS03170at 642.411 kb on - strand, within ABID97_RS03170at 642.704 kb on - strand, within ABID97_RS03175at 642.763 kb on + strand, within ABID97_RS03175at 642.763 kb on + strand, within ABID97_RS03175at 642.788 kb on - strand, within ABID97_RS03175at 642.853 kb on + strand, within ABID97_RS03175at 642.856 kb on + strand, within ABID97_RS03175at 643.036 kb on + strand, within ABID97_RS03175at 643.036 kb on + strand, within ABID97_RS03175at 643.036 kb on + strand, within ABID97_RS03175at 643.039 kb on + strand, within ABID97_RS03175at 643.040 kb on - strand, within ABID97_RS03175at 643.042 kb on + strand, within ABID97_RS03175at 643.277 kb on - strandat 643.277 kb on - strandat 643.323 kb on + strandat 643.323 kb on + strandat 643.324 kb on - strandat 643.324 kb on - strandat 643.324 kb on - strandat 643.361 kb on - strandat 643.414 kb on - strandat 643.414 kb on - strandat 643.752 kb on + strand, within ABID97_RS03180at 643.753 kb on - strand, within ABID97_RS03180at 643.753 kb on - strand, within ABID97_RS03180at 644.125 kb on - strand, within ABID97_RS03180at 644.193 kb on + strand, within ABID97_RS03180at 644.193 kb on + strand, within ABID97_RS03180at 644.193 kb on + strand, within ABID97_RS03180at 644.193 kb on + strand, within ABID97_RS03180at 644.194 kb on - strand, within ABID97_RS03180at 644.194 kb on - strand, within ABID97_RS03180at 644.194 kb on - strand, within ABID97_RS03180at 644.194 kb on - strand, within ABID97_RS03180at 644.194 kb on - strand, within ABID97_RS03180at 644.194 kb on - strand, within ABID97_RS03180at 644.194 kb on - strand, within ABID97_RS03180at 644.194 kb on - strand, within ABID97_RS03180at 644.194 kb on - strand, within ABID97_RS03180at 644.229 kb on + strand, within ABID97_RS03180at 644.229 kb on + strand, within ABID97_RS03180at 644.230 kb on - strand, within ABID97_RS03180at 644.265 kb on + strand, within ABID97_RS03180at 644.265 kb on + strand, within ABID97_RS03180at 644.266 kb on - strand, within ABID97_RS03180at 644.337 kb on + strand, within ABID97_RS03180at 644.338 kb on - strand, within ABID97_RS03180at 644.338 kb on - strand, within ABID97_RS03180at 644.439 kb on + strand, within ABID97_RS03180at 644.821 kb on - strand, within ABID97_RS03180at 644.832 kb on + strand, within ABID97_RS03180at 644.845 kb on - strand, within ABID97_RS03180at 644.907 kb on + strand, within ABID97_RS03180at 644.967 kb on - strand, within ABID97_RS03180at 645.025 kb on - strand, within ABID97_RS03180at 645.042 kb on + strand, within ABID97_RS03180at 645.043 kb on - strand, within ABID97_RS03180at 645.043 kb on - strand, within ABID97_RS03180at 645.295 kb on - strandat 645.339 kb on + strandat 645.340 kb on - strandat 646.273 kb on - strand, within ABID97_RS03185

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant outgrowth control
remove
642,359 + ABID97_RS03170 0.84 -1.1
642,360 - ABID97_RS03170 0.84 +0.2
642,411 - ABID97_RS03170 0.89 +0.6
642,411 - ABID97_RS03170 0.89 +0.1
642,704 - ABID97_RS03175 0.27 -0.3
642,763 + ABID97_RS03175 0.35 -0.5
642,763 + ABID97_RS03175 0.35 -0.3
642,788 - ABID97_RS03175 0.39 +0.0
642,853 + ABID97_RS03175 0.47 +0.0
642,856 + ABID97_RS03175 0.48 +0.2
643,036 + ABID97_RS03175 0.73 -1.2
643,036 + ABID97_RS03175 0.73 -0.6
643,036 + ABID97_RS03175 0.73 -0.0
643,039 + ABID97_RS03175 0.73 +0.3
643,040 - ABID97_RS03175 0.73 -0.9
643,042 + ABID97_RS03175 0.73 +0.1
643,277 - +0.5
643,277 - -0.1
643,323 + -0.4
643,323 + -0.1
643,324 - -0.6
643,324 - -0.2
643,324 - -0.4
643,361 - +0.0
643,414 - +3.5
643,414 - +0.1
643,752 + ABID97_RS03180 0.21 +0.1
643,753 - ABID97_RS03180 0.21 +0.4
643,753 - ABID97_RS03180 0.21 +0.4
644,125 - ABID97_RS03180 0.39 +0.3
644,193 + ABID97_RS03180 0.43 +0.2
644,193 + ABID97_RS03180 0.43 +0.9
644,193 + ABID97_RS03180 0.43 -0.1
644,193 + ABID97_RS03180 0.43 +0.9
644,194 - ABID97_RS03180 0.43 -0.3
644,194 - ABID97_RS03180 0.43 -1.8
644,194 - ABID97_RS03180 0.43 -0.3
644,194 - ABID97_RS03180 0.43 +0.1
644,194 - ABID97_RS03180 0.43 -0.2
644,194 - ABID97_RS03180 0.43 +0.3
644,194 - ABID97_RS03180 0.43 +0.7
644,194 - ABID97_RS03180 0.43 +0.7
644,194 - ABID97_RS03180 0.43 -0.7
644,229 + ABID97_RS03180 0.45 -0.0
644,229 + ABID97_RS03180 0.45 +1.0
644,230 - ABID97_RS03180 0.45 +0.0
644,265 + ABID97_RS03180 0.46 -0.0
644,265 + ABID97_RS03180 0.46 +1.3
644,266 - ABID97_RS03180 0.46 -0.1
644,337 + ABID97_RS03180 0.50 +0.0
644,338 - ABID97_RS03180 0.50 +0.0
644,338 - ABID97_RS03180 0.50 -0.0
644,439 + ABID97_RS03180 0.55 -0.1
644,821 - ABID97_RS03180 0.74 -0.2
644,832 + ABID97_RS03180 0.75 +0.0
644,845 - ABID97_RS03180 0.75 +0.7
644,907 + ABID97_RS03180 0.78 +1.3
644,967 - ABID97_RS03180 0.81 -0.1
645,025 - ABID97_RS03180 0.84 -0.2
645,042 + ABID97_RS03180 0.85 -0.3
645,043 - ABID97_RS03180 0.85 +0.3
645,043 - ABID97_RS03180 0.85 -0.1
645,295 - -0.5
645,339 + +0.1
645,340 - -0.5
646,273 - ABID97_RS03185 0.52 +0.5

Or see this region's nucleotide sequence