Strain Fitness in Escherichia coli BW25113 around b3232
Experiment: ethyl acetate 5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | ethyl acetate 5 vol% |
---|---|---|---|---|---|
remove | |||||
3,376,719 | - | +0.6 | |||
3,376,719 | - | -0.7 | |||
3,376,844 | - | -1.9 | |||
3,376,845 | - | +0.2 | |||
3,376,929 | - | -0.3 | |||
3,377,108 | + | yhcM | b3232 | 0.19 | -1.4 |
3,377,108 | + | yhcM | b3232 | 0.19 | -0.1 |
3,377,130 | - | yhcM | b3232 | 0.21 | -0.9 |
3,377,162 | - | yhcM | b3232 | 0.24 | -0.7 |
3,377,182 | - | yhcM | b3232 | 0.26 | -1.9 |
3,377,191 | + | yhcM | b3232 | 0.27 | -1.5 |
3,377,191 | + | yhcM | b3232 | 0.27 | -1.5 |
3,377,193 | + | yhcM | b3232 | 0.27 | -1.2 |
3,377,193 | + | yhcM | b3232 | 0.27 | -0.7 |
3,377,283 | + | yhcM | b3232 | 0.35 | -1.4 |
3,377,296 | - | yhcM | b3232 | 0.36 | -0.5 |
3,377,296 | - | yhcM | b3232 | 0.36 | -2.6 |
3,377,299 | + | yhcM | b3232 | 0.36 | +0.1 |
3,377,375 | - | yhcM | b3232 | 0.43 | -1.8 |
3,377,375 | - | yhcM | b3232 | 0.43 | -1.2 |
3,377,375 | - | yhcM | b3232 | 0.43 | -0.4 |
3,377,375 | - | yhcM | b3232 | 0.43 | -0.6 |
3,377,375 | - | yhcM | b3232 | 0.43 | +0.9 |
3,377,375 | - | yhcM | b3232 | 0.43 | -0.6 |
3,377,412 | + | yhcM | b3232 | 0.46 | -0.6 |
3,377,412 | + | yhcM | b3232 | 0.46 | -0.1 |
3,377,514 | + | yhcM | b3232 | 0.55 | -1.3 |
3,377,516 | - | yhcM | b3232 | 0.55 | -1.5 |
3,377,520 | - | yhcM | b3232 | 0.56 | -0.6 |
3,377,520 | - | yhcM | b3232 | 0.56 | +1.4 |
3,377,651 | + | yhcM | b3232 | 0.67 | -1.0 |
3,377,652 | + | yhcM | b3232 | 0.67 | -0.7 |
3,377,652 | + | yhcM | b3232 | 0.67 | +0.2 |
3,377,659 | + | yhcM | b3232 | 0.68 | -1.4 |
3,377,668 | - | yhcM | b3232 | 0.69 | -1.9 |
3,377,668 | - | yhcM | b3232 | 0.69 | -1.5 |
3,377,677 | + | yhcM | b3232 | 0.70 | -1.6 |
3,377,677 | + | yhcM | b3232 | 0.70 | -1.1 |
3,377,700 | - | yhcM | b3232 | 0.72 | -0.2 |
3,377,800 | - | yhcM | b3232 | 0.80 | -0.6 |
3,377,848 | - | yhcM | b3232 | 0.85 | -1.1 |
3,377,848 | - | yhcM | b3232 | 0.85 | +1.3 |
3,377,853 | - | yhcM | b3232 | 0.85 | -2.0 |
3,377,853 | - | yhcM | b3232 | 0.85 | -0.6 |
3,377,900 | - | yhcM | b3232 | 0.89 | -1.6 |
3,377,900 | - | yhcM | b3232 | 0.89 | -1.7 |
3,377,903 | - | yhcM | b3232 | 0.90 | -0.7 |
3,377,903 | - | yhcM | b3232 | 0.90 | -0.9 |
3,377,960 | - | -0.7 | |||
3,377,977 | - | -1.1 | |||
3,377,980 | - | -0.3 | |||
3,377,980 | - | +0.9 | |||
3,378,083 | + | -0.1 | |||
3,378,091 | - | +1.4 | |||
3,378,091 | - | +0.1 | |||
3,378,091 | - | -0.3 | |||
3,378,158 | + | -0.6 | |||
3,378,158 | + | +0.1 | |||
3,378,166 | + | -0.5 | |||
3,378,173 | + | +0.2 | |||
3,378,173 | + | +0.2 | |||
3,378,188 | - | -0.9 | |||
3,378,532 | + | +2.0 | |||
3,378,584 | + | -2.1 | |||
3,378,640 | + | +2.0 | |||
3,378,654 | + | +0.0 | |||
3,378,693 | - | +0.0 | |||
3,378,711 | + | +0.2 | |||
3,378,731 | + | +0.5 | |||
3,378,783 | + | -0.2 | |||
3,378,798 | + | +0.4 | |||
3,378,798 | + | -0.1 | |||
3,378,824 | - | +0.5 | |||
3,378,825 | + | -1.0 | |||
3,378,858 | - | -1.4 | |||
3,378,858 | - | +0.7 | |||
3,378,881 | + | -0.4 | |||
3,378,898 | - | -0.9 | |||
3,378,928 | + | degQ | b3234 | 0.12 | +0.1 |
3,378,936 | - | degQ | b3234 | 0.12 | +0.6 |
3,378,952 | + | degQ | b3234 | 0.14 | +0.3 |
Or see this region's nucleotide sequence