Experiment: LB_plus_SM_buffer with FelixO1_phage (wt new) 0.0075 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF866 and GFF867 are separated by 12 nucleotides GFF867 and GFF868 are separated by 33 nucleotides GFF868 and GFF869 overlap by 11 nucleotides
GFF866 - '2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC 3.1.4.16)' transl_table=11, at 42,909 to 44,852
GFF866
GFF867 - FIG01048799: hypothetical protein, at 44,865 to 45,086
GFF867
GFF868 - '3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)' transl_table=11, at 45,120 to 45,860
GFF868
GFF869 - Protein ytfJ precursor, at 45,850 to 46,407
GFF869
Position (kb) 44
45
46 Strain fitness (log2 ratio) -1
0
1 at 43.889 kb on - strand, within GFF866 at 43.889 kb on - strand, within GFF866 at 43.893 kb on - strand, within GFF866 at 44.093 kb on + strand, within GFF866 at 44.155 kb on + strand, within GFF866 at 44.190 kb on + strand, within GFF866 at 44.191 kb on - strand, within GFF866 at 44.389 kb on + strand, within GFF866 at 44.495 kb on + strand, within GFF866 at 44.594 kb on + strand, within GFF866 at 44.594 kb on + strand, within GFF866 at 44.594 kb on + strand, within GFF866 at 44.597 kb on - strand, within GFF866 at 44.695 kb on - strand at 44.695 kb on - strand at 44.729 kb on - strand at 44.846 kb on + strand at 44.846 kb on + strand at 44.867 kb on - strand at 44.878 kb on - strand at 44.901 kb on - strand, within GFF867 at 45.023 kb on + strand, within GFF867 at 45.073 kb on + strand at 45.092 kb on + strand at 45.133 kb on + strand at 45.134 kb on - strand at 45.177 kb on + strand at 45.177 kb on + strand at 45.489 kb on + strand, within GFF868 at 45.490 kb on - strand, within GFF868 at 45.490 kb on - strand, within GFF868 at 45.507 kb on - strand, within GFF868 at 45.537 kb on - strand, within GFF868 at 45.808 kb on - strand at 45.851 kb on + strand at 45.852 kb on - strand at 45.867 kb on + strand at 46.038 kb on - strand, within GFF869 at 46.050 kb on + strand, within GFF869 at 46.058 kb on - strand, within GFF869 at 46.058 kb on - strand, within GFF869 at 46.058 kb on - strand, within GFF869 at 46.078 kb on - strand, within GFF869
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt new) 0.0075 MOI remove 43,889 - GFF866 0.50 -0.2 43,889 - GFF866 0.50 -0.1 43,893 - GFF866 0.51 -0.4 44,093 + GFF866 0.61 -0.3 44,155 + GFF866 0.64 -0.0 44,190 + GFF866 0.66 +0.2 44,191 - GFF866 0.66 -0.0 44,389 + GFF866 0.76 +0.7 44,495 + GFF866 0.82 +0.1 44,594 + GFF866 0.87 +0.1 44,594 + GFF866 0.87 -0.1 44,594 + GFF866 0.87 +0.3 44,597 - GFF866 0.87 -0.1 44,695 - -0.6 44,695 - +0.3 44,729 - +0.1 44,846 + -0.2 44,846 + -0.4 44,867 - -0.4 44,878 - +0.2 44,901 - GFF867 0.16 -1.4 45,023 + GFF867 0.71 -0.3 45,073 + -0.2 45,092 + -0.3 45,133 + -0.1 45,134 - +0.0 45,177 + -0.7 45,177 + +0.1 45,489 + GFF868 0.50 -0.2 45,490 - GFF868 0.50 +0.2 45,490 - GFF868 0.50 +0.1 45,507 - GFF868 0.52 -0.2 45,537 - GFF868 0.56 +0.0 45,808 - +0.2 45,851 + +0.0 45,852 - +0.1 45,867 + -0.1 46,038 - GFF869 0.34 +0.3 46,050 + GFF869 0.36 -0.1 46,058 - GFF869 0.37 -0.1 46,058 - GFF869 0.37 +0.0 46,058 - GFF869 0.37 +0.1 46,078 - GFF869 0.41 -0.2
Or see this region's nucleotide sequence