Experiment: LB_plus_SM_buffer with FelixO1_phage (wt new) 0.0075 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4363 and GFF4364 are separated by 112 nucleotides GFF4364 and GFF4365 are separated by 40 nucleotides GFF4365 and GFF4366 overlap by 8 nucleotides
GFF4363 - Cysteine synthase B (EC 2.5.1.47), at 145,312 to 146,367
GFF4363
GFF4364 - Putative HTH-type transcriptional regulator ybaO, at 146,480 to 146,938
GFF4364
GFF4365 - ATP-binding component, at 146,979 to 148,751
GFF4365
GFF4366 - putative multidrug transporter membrane ATP-binding components, at 148,744 to 150,525
GFF4366
Position (kb) 146
147
148
149 Strain fitness (log2 ratio) -1
0
1 at 146.180 kb on + strand, within GFF4363 at 146.250 kb on - strand, within GFF4363 at 146.399 kb on - strand at 146.500 kb on + strand at 146.531 kb on - strand, within GFF4364 at 146.531 kb on - strand, within GFF4364 at 146.787 kb on - strand, within GFF4364 at 146.787 kb on - strand, within GFF4364 at 146.840 kb on + strand, within GFF4364 at 146.909 kb on - strand at 146.909 kb on - strand at 146.909 kb on - strand at 146.909 kb on - strand at 146.986 kb on + strand at 147.030 kb on + strand at 147.054 kb on - strand at 147.220 kb on + strand, within GFF4365 at 147.241 kb on + strand, within GFF4365 at 147.447 kb on - strand, within GFF4365 at 147.457 kb on + strand, within GFF4365 at 147.463 kb on + strand, within GFF4365 at 147.665 kb on + strand, within GFF4365 at 147.819 kb on - strand, within GFF4365 at 147.826 kb on - strand, within GFF4365 at 147.942 kb on - strand, within GFF4365 at 148.197 kb on - strand, within GFF4365 at 148.254 kb on - strand, within GFF4365 at 148.330 kb on + strand, within GFF4365 at 148.330 kb on + strand, within GFF4365 at 148.330 kb on + strand, within GFF4365 at 148.439 kb on - strand, within GFF4365 at 148.676 kb on + strand at 148.680 kb on + strand at 148.680 kb on + strand at 148.680 kb on + strand at 148.681 kb on - strand at 148.763 kb on + strand at 148.764 kb on - strand at 148.764 kb on - strand at 148.955 kb on - strand, within GFF4366 at 148.965 kb on - strand, within GFF4366 at 149.006 kb on + strand, within GFF4366 at 149.158 kb on + strand, within GFF4366 at 149.158 kb on + strand, within GFF4366 at 149.159 kb on - strand, within GFF4366 at 149.183 kb on + strand, within GFF4366 at 149.183 kb on + strand, within GFF4366 at 149.183 kb on + strand, within GFF4366 at 149.277 kb on - strand, within GFF4366 at 149.296 kb on + strand, within GFF4366 at 149.321 kb on + strand, within GFF4366 at 149.322 kb on - strand, within GFF4366 at 149.338 kb on + strand, within GFF4366 at 149.349 kb on + strand, within GFF4366 at 149.391 kb on - strand, within GFF4366 at 149.456 kb on - strand, within GFF4366 at 149.535 kb on - strand, within GFF4366 at 149.562 kb on + strand, within GFF4366 at 149.596 kb on + strand, within GFF4366 at 149.607 kb on + strand, within GFF4366 at 149.607 kb on + strand, within GFF4366 at 149.611 kb on + strand, within GFF4366 at 149.611 kb on + strand, within GFF4366 at 149.666 kb on + strand, within GFF4366
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt new) 0.0075 MOI remove 146,180 + GFF4363 0.82 +0.4 146,250 - GFF4363 0.89 -0.1 146,399 - -0.3 146,500 + -0.5 146,531 - GFF4364 0.11 +0.7 146,531 - GFF4364 0.11 +0.8 146,787 - GFF4364 0.67 +0.4 146,787 - GFF4364 0.67 +0.6 146,840 + GFF4364 0.78 +0.7 146,909 - -0.4 146,909 - +0.7 146,909 - +0.5 146,909 - -0.1 146,986 + +0.4 147,030 + +0.8 147,054 - +1.0 147,220 + GFF4365 0.14 +0.5 147,241 + GFF4365 0.15 +0.5 147,447 - GFF4365 0.26 +0.7 147,457 + GFF4365 0.27 +0.5 147,463 + GFF4365 0.27 +1.0 147,665 + GFF4365 0.39 +0.6 147,819 - GFF4365 0.47 +0.6 147,826 - GFF4365 0.48 +0.8 147,942 - GFF4365 0.54 +0.6 148,197 - GFF4365 0.69 +0.3 148,254 - GFF4365 0.72 +0.2 148,330 + GFF4365 0.76 +0.4 148,330 + GFF4365 0.76 +1.2 148,330 + GFF4365 0.76 +0.5 148,439 - GFF4365 0.82 +0.9 148,676 + +0.3 148,680 + +1.6 148,680 + +0.3 148,680 + +0.2 148,681 - +0.7 148,763 + +1.5 148,764 - +0.9 148,764 - +0.8 148,955 - GFF4366 0.12 +0.4 148,965 - GFF4366 0.12 +0.3 149,006 + GFF4366 0.15 +0.0 149,158 + GFF4366 0.23 +0.1 149,158 + GFF4366 0.23 +0.6 149,159 - GFF4366 0.23 +0.3 149,183 + GFF4366 0.25 +0.2 149,183 + GFF4366 0.25 +0.6 149,183 + GFF4366 0.25 +1.2 149,277 - GFF4366 0.30 +0.2 149,296 + GFF4366 0.31 +0.0 149,321 + GFF4366 0.32 +0.2 149,322 - GFF4366 0.32 -0.3 149,338 + GFF4366 0.33 +1.0 149,349 + GFF4366 0.34 +1.3 149,391 - GFF4366 0.36 -0.5 149,456 - GFF4366 0.40 -0.1 149,535 - GFF4366 0.44 +0.5 149,562 + GFF4366 0.46 +0.3 149,596 + GFF4366 0.48 +0.6 149,607 + GFF4366 0.48 +0.5 149,607 + GFF4366 0.48 +0.6 149,611 + GFF4366 0.49 +0.6 149,611 + GFF4366 0.49 +0.5 149,666 + GFF4366 0.52 +0.2
Or see this region's nucleotide sequence