Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3828

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt new) 0.0075 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3826 and GFF3827 are separated by 278 nucleotidesGFF3827 and GFF3828 are separated by 55 nucleotidesGFF3828 and GFF3829 are separated by 13 nucleotides GFF3826 - FIG00510335: hypothetical protein, at 96,665 to 96,946 GFF3826 GFF3827 - probable fimbrial chain protein stcA, at 97,225 to 97,755 GFF3827 GFF3828 - Uncharacterized fimbrial chaperone YehC precursor, at 97,811 to 98,494 GFF3828 GFF3829 - Fimbriae usher protein StcC, at 98,508 to 100,997 GFF3829 Position (kb) 97 98 99Strain fitness (log2 ratio) -1 0 1at 96.829 kb on + strand, within GFF3826at 98.214 kb on + strand, within GFF3828at 98.456 kb on - strandat 98.917 kb on + strand, within GFF3829at 98.941 kb on + strand, within GFF3829at 98.941 kb on + strand, within GFF3829at 98.989 kb on - strand, within GFF3829at 99.006 kb on + strand, within GFF3829at 99.007 kb on - strand, within GFF3829at 99.191 kb on - strand, within GFF3829at 99.208 kb on - strand, within GFF3829at 99.210 kb on - strand, within GFF3829at 99.477 kb on - strand, within GFF3829

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt new) 0.0075 MOI
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96,829 + GFF3826 0.58 -0.2
98,214 + GFF3828 0.59 -1.1
98,456 - +0.2
98,917 + GFF3829 0.16 +0.9
98,941 + GFF3829 0.17 +0.3
98,941 + GFF3829 0.17 +0.1
98,989 - GFF3829 0.19 -0.0
99,006 + GFF3829 0.20 -0.5
99,007 - GFF3829 0.20 -0.5
99,191 - GFF3829 0.27 +0.1
99,208 - GFF3829 0.28 -0.2
99,210 - GFF3829 0.28 -0.1
99,477 - GFF3829 0.39 -0.0

Or see this region's nucleotide sequence