Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF333

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt new) 0.0075 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF332 and GFF333 are separated by 7 nucleotidesGFF333 and GFF334 are separated by 98 nucleotides GFF332 - Mg(2+) transport ATPase protein C, at 47,913 to 48,590 GFF332 GFF333 - hypothetical protein, at 48,598 to 48,711 GFF333 GFF334 - Mg(2+) transport ATPase, P-type (EC 3.6.3.2), at 48,810 to 51,536 GFF334 Position (kb) 48 49Strain fitness (log2 ratio) -1 0 1at 47.628 kb on - strandat 47.751 kb on - strandat 47.869 kb on - strandat 47.993 kb on + strand, within GFF332at 47.993 kb on + strand, within GFF332at 47.994 kb on - strand, within GFF332at 48.302 kb on - strand, within GFF332at 48.341 kb on + strand, within GFF332at 48.436 kb on + strand, within GFF332at 48.437 kb on - strand, within GFF332at 48.626 kb on + strand, within GFF333at 48.964 kb on + strandat 49.075 kb on - strandat 49.199 kb on - strand, within GFF334at 49.226 kb on + strand, within GFF334at 49.437 kb on - strand, within GFF334at 49.472 kb on + strand, within GFF334at 49.490 kb on + strand, within GFF334at 49.567 kb on + strand, within GFF334

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt new) 0.0075 MOI
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47,628 - +0.2
47,751 - +0.7
47,869 - -0.2
47,993 + GFF332 0.12 +0.7
47,993 + GFF332 0.12 +0.0
47,994 - GFF332 0.12 +0.1
48,302 - GFF332 0.57 +0.5
48,341 + GFF332 0.63 +0.6
48,436 + GFF332 0.77 +0.4
48,437 - GFF332 0.77 -0.5
48,626 + GFF333 0.25 +0.5
48,964 + +0.4
49,075 - +0.0
49,199 - GFF334 0.14 -0.0
49,226 + GFF334 0.15 -0.3
49,437 - GFF334 0.23 +0.6
49,472 + GFF334 0.24 -0.6
49,490 + GFF334 0.25 -0.9
49,567 + GFF334 0.28 -0.6

Or see this region's nucleotide sequence