Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2436

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt new) 0.0075 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2435 and GFF2436 are separated by 180 nucleotidesGFF2436 and GFF2437 are separated by 159 nucleotides GFF2435 - Cysteine desulfurase (EC 2.8.1.7), IscS subfamily, at 50,021 to 51,235 GFF2435 GFF2436 - Iron-sulfur cluster regulator IscR, at 51,416 to 51,910 GFF2436 GFF2437 - tRNA:Cm32/Um32 methyltransferase, at 52,070 to 52,801 GFF2437 Position (kb) 51 52Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 51.252 kb on - strandat 51.292 kb on - strandat 51.406 kb on - strandat 51.542 kb on - strand, within GFF2436at 51.765 kb on - strand, within GFF2436at 51.777 kb on - strand, within GFF2436at 51.896 kb on - strandat 51.916 kb on - strandat 51.916 kb on - strandat 51.920 kb on - strandat 52.015 kb on + strandat 52.082 kb on - strandat 52.609 kb on + strand, within GFF2437at 52.709 kb on - strand, within GFF2437

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt new) 0.0075 MOI
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51,252 - -3.9
51,292 - -3.5
51,406 - -0.1
51,542 - GFF2436 0.25 +1.8
51,765 - GFF2436 0.71 +1.2
51,777 - GFF2436 0.73 +1.0
51,896 - +0.8
51,916 - +1.0
51,916 - +1.2
51,920 - +1.1
52,015 + +0.1
52,082 - +0.2
52,609 + GFF2437 0.74 +0.5
52,709 - GFF2437 0.87 +0.2

Or see this region's nucleotide sequence