Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2016

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt new) 0.0075 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2014 and GFF2015 are separated by 120 nucleotidesGFF2015 and GFF2016 overlap by 25 nucleotidesGFF2016 and GFF2017 are separated by 36 nucleotidesGFF2017 and GFF2032 are separated by 115 nucleotides GFF2014 - C4-dicarboxylate transporter DcuA, at 25,644 to 26,945 GFF2014 GFF2015 - Periplasmic divalent cation tolerance protein CutA, at 27,066 to 27,413 GFF2015 GFF2016 - Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8), at 27,389 to 29,092 GFF2016 GFF2017 - Transcriptional regulator, TetR family, at 29,129 to 29,704 GFF2017 GFF2032 - tRNA-Phe-GAA, at 29,820 to 29,895 GFF2032 Position (kb) 27 28 29 30Strain fitness (log2 ratio) -2 -1 0 1at 26.534 kb on + strand, within GFF2014at 26.534 kb on + strand, within GFF2014at 26.535 kb on - strand, within GFF2014at 26.535 kb on - strand, within GFF2014at 26.540 kb on + strand, within GFF2014at 26.540 kb on + strand, within GFF2014at 26.541 kb on - strand, within GFF2014at 26.676 kb on + strand, within GFF2014at 26.793 kb on + strand, within GFF2014at 26.816 kb on - strandat 26.936 kb on + strandat 26.937 kb on - strandat 26.937 kb on - strandat 26.944 kb on - strandat 26.966 kb on - strandat 27.019 kb on + strandat 27.020 kb on - strandat 27.020 kb on - strandat 27.021 kb on + strandat 27.065 kb on + strandat 27.223 kb on - strand, within GFF2015at 27.252 kb on + strand, within GFF2015at 27.253 kb on - strand, within GFF2015at 27.375 kb on - strand, within GFF2015at 27.381 kb on + strandat 27.382 kb on - strandat 27.382 kb on - strandat 27.407 kb on - strandat 27.563 kb on + strand, within GFF2016at 27.564 kb on - strand, within GFF2016at 27.564 kb on - strand, within GFF2016at 27.699 kb on + strand, within GFF2016at 27.743 kb on + strand, within GFF2016at 27.744 kb on - strand, within GFF2016at 27.744 kb on - strand, within GFF2016at 27.886 kb on - strand, within GFF2016at 27.922 kb on - strand, within GFF2016at 27.948 kb on + strand, within GFF2016at 27.957 kb on - strand, within GFF2016at 28.034 kb on + strand, within GFF2016at 28.035 kb on - strand, within GFF2016at 28.035 kb on - strand, within GFF2016at 28.038 kb on + strand, within GFF2016at 28.039 kb on - strand, within GFF2016at 28.039 kb on - strand, within GFF2016at 28.039 kb on - strand, within GFF2016at 28.058 kb on + strand, within GFF2016at 28.058 kb on + strand, within GFF2016at 28.058 kb on + strand, within GFF2016at 28.059 kb on - strand, within GFF2016at 28.095 kb on + strand, within GFF2016at 28.124 kb on + strand, within GFF2016at 28.132 kb on - strand, within GFF2016at 28.191 kb on + strand, within GFF2016at 28.191 kb on + strand, within GFF2016at 28.340 kb on + strand, within GFF2016at 28.391 kb on + strand, within GFF2016at 28.391 kb on + strand, within GFF2016at 28.392 kb on - strand, within GFF2016at 28.399 kb on - strand, within GFF2016at 28.417 kb on - strand, within GFF2016at 28.525 kb on - strand, within GFF2016at 28.525 kb on - strand, within GFF2016at 28.538 kb on - strand, within GFF2016at 28.750 kb on + strand, within GFF2016at 29.144 kb on - strandat 29.194 kb on + strand, within GFF2017at 29.261 kb on - strand, within GFF2017at 29.275 kb on - strand, within GFF2017at 29.275 kb on - strand, within GFF2017at 29.291 kb on + strand, within GFF2017at 29.308 kb on - strand, within GFF2017at 29.312 kb on - strand, within GFF2017at 29.402 kb on - strand, within GFF2017at 29.468 kb on - strand, within GFF2017at 29.512 kb on + strand, within GFF2017at 29.635 kb on + strand, within GFF2017at 29.758 kb on - strandat 29.916 kb on + strandat 29.976 kb on + strandat 29.977 kb on - strandat 29.977 kb on - strandat 29.980 kb on + strandat 29.982 kb on + strandat 29.982 kb on + strandat 30.061 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt new) 0.0075 MOI
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26,534 + GFF2014 0.68 -1.0
26,534 + GFF2014 0.68 -0.9
26,535 - GFF2014 0.68 +0.4
26,535 - GFF2014 0.68 -0.0
26,540 + GFF2014 0.69 -0.0
26,540 + GFF2014 0.69 +0.0
26,541 - GFF2014 0.69 -0.2
26,676 + GFF2014 0.79 +0.7
26,793 + GFF2014 0.88 +0.2
26,816 - +0.1
26,936 + +0.7
26,937 - +0.3
26,937 - +0.1
26,944 - -0.1
26,966 - +0.4
27,019 + +0.1
27,020 - -0.2
27,020 - -0.2
27,021 + -0.0
27,065 + -0.2
27,223 - GFF2015 0.45 +0.0
27,252 + GFF2015 0.53 +0.0
27,253 - GFF2015 0.54 +0.2
27,375 - GFF2015 0.89 -0.9
27,381 + +1.2
27,382 - +1.2
27,382 - +0.8
27,407 - -0.0
27,563 + GFF2016 0.10 -2.0
27,564 - GFF2016 0.10 -0.8
27,564 - GFF2016 0.10 -0.9
27,699 + GFF2016 0.18 -2.7
27,743 + GFF2016 0.21 -0.6
27,744 - GFF2016 0.21 -0.9
27,744 - GFF2016 0.21 -0.9
27,886 - GFF2016 0.29 -1.7
27,922 - GFF2016 0.31 -1.0
27,948 + GFF2016 0.33 -0.6
27,957 - GFF2016 0.33 -1.1
28,034 + GFF2016 0.38 -1.0
28,035 - GFF2016 0.38 +0.2
28,035 - GFF2016 0.38 -0.1
28,038 + GFF2016 0.38 -1.3
28,039 - GFF2016 0.38 -1.1
28,039 - GFF2016 0.38 -1.1
28,039 - GFF2016 0.38 -0.9
28,058 + GFF2016 0.39 -0.3
28,058 + GFF2016 0.39 -1.1
28,058 + GFF2016 0.39 +1.0
28,059 - GFF2016 0.39 -0.7
28,095 + GFF2016 0.41 -0.7
28,124 + GFF2016 0.43 -1.0
28,132 - GFF2016 0.44 -0.0
28,191 + GFF2016 0.47 -1.2
28,191 + GFF2016 0.47 -1.0
28,340 + GFF2016 0.56 -0.0
28,391 + GFF2016 0.59 -0.5
28,391 + GFF2016 0.59 -0.7
28,392 - GFF2016 0.59 -1.2
28,399 - GFF2016 0.59 -0.8
28,417 - GFF2016 0.60 -0.9
28,525 - GFF2016 0.67 -1.2
28,525 - GFF2016 0.67 -1.3
28,538 - GFF2016 0.67 -1.1
28,750 + GFF2016 0.80 -1.0
29,144 - +0.1
29,194 + GFF2017 0.11 -0.0
29,261 - GFF2017 0.23 +0.4
29,275 - GFF2017 0.25 -1.2
29,275 - GFF2017 0.25 -1.1
29,291 + GFF2017 0.28 -0.0
29,308 - GFF2017 0.31 +0.6
29,312 - GFF2017 0.32 +0.2
29,402 - GFF2017 0.47 -0.1
29,468 - GFF2017 0.59 -0.7
29,512 + GFF2017 0.66 -0.6
29,635 + GFF2017 0.88 +0.4
29,758 - -0.4
29,916 + -0.0
29,976 + +0.7
29,977 - -0.7
29,977 - -0.3
29,980 + +1.0
29,982 + +0.1
29,982 + +0.6
30,061 - +0.4

Or see this region's nucleotide sequence