Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1709

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt new) 0.0075 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1708 and GFF1709 are separated by 7 nucleotidesGFF1709 and GFF1710 are separated by 196 nucleotides GFF1708 - Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1), at 6,248 to 7,753 GFF1708 GFF1709 - Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1), at 7,761 to 8,180 GFF1709 GFF1710 - Kup system potassium uptake protein, at 8,377 to 10,245 GFF1710 Position (kb) 7 8 9Strain fitness (log2 ratio) -1 0 1 2 3at 6.762 kb on + strand, within GFF1708at 6.763 kb on - strand, within GFF1708at 6.831 kb on + strand, within GFF1708at 6.831 kb on + strand, within GFF1708at 7.033 kb on + strand, within GFF1708at 7.154 kb on - strand, within GFF1708at 7.166 kb on - strand, within GFF1708at 7.167 kb on + strand, within GFF1708at 7.167 kb on + strand, within GFF1708at 7.168 kb on - strand, within GFF1708at 7.168 kb on - strand, within GFF1708at 7.168 kb on - strand, within GFF1708at 7.168 kb on - strand, within GFF1708at 7.168 kb on - strand, within GFF1708at 7.505 kb on - strand, within GFF1708at 7.593 kb on + strand, within GFF1708at 7.593 kb on + strand, within GFF1708at 7.594 kb on - strand, within GFF1708at 7.605 kb on - strandat 7.720 kb on + strandat 8.027 kb on + strand, within GFF1709at 8.028 kb on - strand, within GFF1709at 8.115 kb on - strand, within GFF1709at 8.121 kb on - strand, within GFF1709at 8.163 kb on + strandat 8.163 kb on + strandat 8.222 kb on - strandat 8.240 kb on - strandat 8.307 kb on + strandat 8.322 kb on + strandat 8.394 kb on + strandat 8.399 kb on - strandat 8.496 kb on - strandat 8.535 kb on + strandat 8.565 kb on + strand, within GFF1710at 8.565 kb on + strand, within GFF1710at 8.566 kb on - strand, within GFF1710at 8.566 kb on - strand, within GFF1710at 8.689 kb on - strand, within GFF1710at 8.696 kb on + strand, within GFF1710at 8.696 kb on + strand, within GFF1710at 8.773 kb on + strand, within GFF1710at 8.810 kb on + strand, within GFF1710at 8.810 kb on + strand, within GFF1710at 8.810 kb on + strand, within GFF1710at 8.810 kb on + strand, within GFF1710at 8.811 kb on - strand, within GFF1710at 8.811 kb on - strand, within GFF1710at 8.811 kb on - strand, within GFF1710at 8.811 kb on - strand, within GFF1710at 8.811 kb on - strand, within GFF1710at 8.811 kb on - strand, within GFF1710at 8.813 kb on - strand, within GFF1710at 8.895 kb on + strand, within GFF1710at 8.994 kb on + strand, within GFF1710at 9.063 kb on - strand, within GFF1710at 9.085 kb on - strand, within GFF1710at 9.108 kb on + strand, within GFF1710at 9.147 kb on - strand, within GFF1710

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt new) 0.0075 MOI
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6,762 + GFF1708 0.34 +0.7
6,763 - GFF1708 0.34 -0.5
6,831 + GFF1708 0.39 +1.0
6,831 + GFF1708 0.39 +0.1
7,033 + GFF1708 0.52 +0.5
7,154 - GFF1708 0.60 +0.3
7,166 - GFF1708 0.61 +0.2
7,167 + GFF1708 0.61 +0.7
7,167 + GFF1708 0.61 +0.2
7,168 - GFF1708 0.61 +0.4
7,168 - GFF1708 0.61 +0.2
7,168 - GFF1708 0.61 +0.1
7,168 - GFF1708 0.61 -0.1
7,168 - GFF1708 0.61 +0.2
7,505 - GFF1708 0.83 +0.0
7,593 + GFF1708 0.89 +0.1
7,593 + GFF1708 0.89 -0.1
7,594 - GFF1708 0.89 +0.2
7,605 - +0.5
7,720 + -0.8
8,027 + GFF1709 0.63 +0.5
8,028 - GFF1709 0.64 +0.5
8,115 - GFF1709 0.84 -0.1
8,121 - GFF1709 0.86 +0.4
8,163 + +2.8
8,163 + +1.7
8,222 - +0.2
8,240 - +0.5
8,307 + +0.4
8,322 + -0.4
8,394 + +1.5
8,399 - +0.4
8,496 - +0.4
8,535 + +0.3
8,565 + GFF1710 0.10 +0.5
8,565 + GFF1710 0.10 +0.2
8,566 - GFF1710 0.10 +0.5
8,566 - GFF1710 0.10 +0.9
8,689 - GFF1710 0.17 +0.6
8,696 + GFF1710 0.17 +0.7
8,696 + GFF1710 0.17 +1.6
8,773 + GFF1710 0.21 +3.6
8,810 + GFF1710 0.23 +0.6
8,810 + GFF1710 0.23 +0.4
8,810 + GFF1710 0.23 +0.8
8,810 + GFF1710 0.23 +0.4
8,811 - GFF1710 0.23 +1.0
8,811 - GFF1710 0.23 +0.5
8,811 - GFF1710 0.23 +0.4
8,811 - GFF1710 0.23 -0.4
8,811 - GFF1710 0.23 +0.3
8,811 - GFF1710 0.23 +1.0
8,813 - GFF1710 0.23 +0.8
8,895 + GFF1710 0.28 +0.3
8,994 + GFF1710 0.33 +0.5
9,063 - GFF1710 0.37 +0.2
9,085 - GFF1710 0.38 +0.1
9,108 + GFF1710 0.39 +0.6
9,147 - GFF1710 0.41 +0.9

Or see this region's nucleotide sequence