Experiment: R2A with Gallium(III) chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3056 and Atu3057 are separated by 131 nucleotides Atu3057 and Atu3059 are separated by 423 nucleotides
Atu3056: Atu3056 - beta 1,3 glucan synthase catalytic subunit, at 54,845 to 56,809
Atu3056
Atu3057: Atu3057 - hypothetical protein, at 56,941 to 58,398
Atu3057
Atu3059: Atu3059 - Na+/H+ antiporter, at 58,822 to 60,405
Atu3059
Position (kb) 56
57
58
59 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 56.229 kb on + strand, within Atu3056 at 56.229 kb on + strand, within Atu3056 at 56.237 kb on - strand, within Atu3056 at 56.237 kb on - strand, within Atu3056 at 56.302 kb on - strand, within Atu3056 at 56.319 kb on + strand, within Atu3056 at 56.319 kb on + strand, within Atu3056 at 56.319 kb on + strand, within Atu3056 at 56.319 kb on + strand, within Atu3056 at 56.319 kb on + strand, within Atu3056 at 56.327 kb on - strand, within Atu3056 at 56.327 kb on - strand, within Atu3056 at 56.327 kb on - strand, within Atu3056 at 56.373 kb on - strand, within Atu3056 at 56.384 kb on - strand, within Atu3056 at 56.433 kb on + strand, within Atu3056 at 56.478 kb on + strand, within Atu3056 at 56.486 kb on - strand, within Atu3056 at 56.538 kb on - strand, within Atu3056 at 56.558 kb on - strand, within Atu3056 at 56.558 kb on - strand, within Atu3056 at 56.576 kb on + strand, within Atu3056 at 56.720 kb on + strand at 56.754 kb on + strand at 56.819 kb on - strand at 56.819 kb on - strand at 56.857 kb on + strand at 56.904 kb on + strand at 56.904 kb on - strand at 56.912 kb on - strand at 56.930 kb on - strand at 56.944 kb on + strand at 56.985 kb on - strand at 56.994 kb on + strand at 57.024 kb on - strand at 57.039 kb on - strand at 57.176 kb on - strand, within Atu3057 at 57.225 kb on + strand, within Atu3057 at 57.234 kb on - strand, within Atu3057 at 57.237 kb on + strand, within Atu3057 at 57.285 kb on - strand, within Atu3057 at 57.290 kb on - strand, within Atu3057 at 57.295 kb on - strand, within Atu3057 at 57.345 kb on - strand, within Atu3057 at 57.347 kb on + strand, within Atu3057 at 57.371 kb on + strand, within Atu3057 at 57.374 kb on - strand, within Atu3057 at 57.381 kb on + strand, within Atu3057 at 57.388 kb on + strand, within Atu3057 at 57.396 kb on - strand, within Atu3057 at 57.409 kb on + strand, within Atu3057 at 57.417 kb on - strand, within Atu3057 at 57.417 kb on - strand, within Atu3057 at 57.455 kb on - strand, within Atu3057 at 57.500 kb on - strand, within Atu3057 at 57.569 kb on + strand, within Atu3057 at 57.569 kb on + strand, within Atu3057 at 57.569 kb on + strand, within Atu3057 at 57.569 kb on + strand, within Atu3057 at 57.569 kb on + strand, within Atu3057 at 57.569 kb on + strand, within Atu3057 at 57.569 kb on + strand, within Atu3057 at 57.577 kb on - strand, within Atu3057 at 57.577 kb on - strand, within Atu3057 at 57.577 kb on - strand, within Atu3057 at 57.577 kb on - strand, within Atu3057 at 57.711 kb on + strand, within Atu3057 at 57.781 kb on - strand, within Atu3057 at 57.885 kb on - strand, within Atu3057 at 58.063 kb on + strand, within Atu3057 at 58.101 kb on - strand, within Atu3057 at 58.133 kb on - strand, within Atu3057 at 58.139 kb on - strand, within Atu3057 at 58.146 kb on + strand, within Atu3057 at 58.146 kb on + strand, within Atu3057 at 58.146 kb on + strand, within Atu3057 at 58.187 kb on + strand, within Atu3057 at 58.195 kb on - strand, within Atu3057 at 58.195 kb on - strand, within Atu3057 at 58.257 kb on + strand at 58.334 kb on + strand at 58.342 kb on - strand at 58.403 kb on - strand at 58.440 kb on + strand at 58.448 kb on - strand at 58.546 kb on + strand at 58.636 kb on + strand at 58.751 kb on + strand at 58.807 kb on + strand at 58.815 kb on - strand at 58.819 kb on + strand at 58.819 kb on + strand at 58.889 kb on - strand at 58.889 kb on - strand at 58.906 kb on - strand at 58.913 kb on + strand at 58.926 kb on + strand at 58.935 kb on + strand at 59.037 kb on + strand, within Atu3059 at 59.096 kb on + strand, within Atu3059 at 59.106 kb on + strand, within Atu3059 at 59.106 kb on + strand, within Atu3059 at 59.106 kb on + strand, within Atu3059 at 59.114 kb on - strand, within Atu3059 at 59.114 kb on - strand, within Atu3059 at 59.157 kb on + strand, within Atu3059 at 59.165 kb on - strand, within Atu3059 at 59.224 kb on + strand, within Atu3059 at 59.227 kb on - strand, within Atu3059 at 59.244 kb on + strand, within Atu3059
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Gallium(III) chloride 0.02 mM remove 56,229 + Atu3056 0.70 -0.9 56,229 + Atu3056 0.70 +0.2 56,237 - Atu3056 0.71 -0.6 56,237 - Atu3056 0.71 +0.1 56,302 - Atu3056 0.74 +2.7 56,319 + Atu3056 0.75 +1.2 56,319 + Atu3056 0.75 +0.0 56,319 + Atu3056 0.75 +0.3 56,319 + Atu3056 0.75 -0.4 56,319 + Atu3056 0.75 -1.9 56,327 - Atu3056 0.75 +0.2 56,327 - Atu3056 0.75 -1.0 56,327 - Atu3056 0.75 +0.1 56,373 - Atu3056 0.78 -0.5 56,384 - Atu3056 0.78 -0.1 56,433 + Atu3056 0.81 -0.1 56,478 + Atu3056 0.83 +1.7 56,486 - Atu3056 0.84 -0.7 56,538 - Atu3056 0.86 -1.0 56,558 - Atu3056 0.87 -0.7 56,558 - Atu3056 0.87 +1.2 56,576 + Atu3056 0.88 +0.0 56,720 + -0.3 56,754 + -0.3 56,819 - -0.3 56,819 - -0.2 56,857 + -0.2 56,904 + -0.3 56,904 - -0.3 56,912 - +0.0 56,930 - -1.1 56,944 + -0.8 56,985 - -0.5 56,994 + +0.2 57,024 - -1.0 57,039 - +1.5 57,176 - Atu3057 0.16 +0.6 57,225 + Atu3057 0.19 +0.1 57,234 - Atu3057 0.20 +0.1 57,237 + Atu3057 0.20 -0.4 57,285 - Atu3057 0.24 +0.3 57,290 - Atu3057 0.24 -0.2 57,295 - Atu3057 0.24 +0.2 57,345 - Atu3057 0.28 +0.0 57,347 + Atu3057 0.28 -0.6 57,371 + Atu3057 0.29 -0.1 57,374 - Atu3057 0.30 -1.5 57,381 + Atu3057 0.30 +0.2 57,388 + Atu3057 0.31 -0.3 57,396 - Atu3057 0.31 -0.1 57,409 + Atu3057 0.32 +0.9 57,417 - Atu3057 0.33 +0.8 57,417 - Atu3057 0.33 -0.8 57,455 - Atu3057 0.35 +0.8 57,500 - Atu3057 0.38 -0.1 57,569 + Atu3057 0.43 -0.0 57,569 + Atu3057 0.43 -0.8 57,569 + Atu3057 0.43 -0.9 57,569 + Atu3057 0.43 +0.6 57,569 + Atu3057 0.43 -0.5 57,569 + Atu3057 0.43 -1.0 57,569 + Atu3057 0.43 -1.2 57,577 - Atu3057 0.44 +0.2 57,577 - Atu3057 0.44 -0.4 57,577 - Atu3057 0.44 -0.4 57,577 - Atu3057 0.44 -0.4 57,711 + Atu3057 0.53 +0.1 57,781 - Atu3057 0.58 -0.1 57,885 - Atu3057 0.65 -1.8 58,063 + Atu3057 0.77 -0.1 58,101 - Atu3057 0.80 -3.3 58,133 - Atu3057 0.82 -0.8 58,139 - Atu3057 0.82 -1.2 58,146 + Atu3057 0.83 +0.2 58,146 + Atu3057 0.83 -0.2 58,146 + Atu3057 0.83 -0.1 58,187 + Atu3057 0.85 +0.5 58,195 - Atu3057 0.86 +0.4 58,195 - Atu3057 0.86 +0.0 58,257 + +0.4 58,334 + +0.3 58,342 - -0.2 58,403 - -0.4 58,440 + -1.2 58,448 - -0.4 58,546 + +0.7 58,636 + -1.1 58,751 + -0.7 58,807 + +0.4 58,815 - -0.2 58,819 + -1.1 58,819 + +0.6 58,889 - +4.2 58,889 - -1.0 58,906 - -0.2 58,913 + +0.0 58,926 + -0.4 58,935 + -1.9 59,037 + Atu3059 0.14 +0.3 59,096 + Atu3059 0.17 -2.0 59,106 + Atu3059 0.18 -0.5 59,106 + Atu3059 0.18 +0.2 59,106 + Atu3059 0.18 +0.2 59,114 - Atu3059 0.18 -1.2 59,114 - Atu3059 0.18 -0.1 59,157 + Atu3059 0.21 -0.1 59,165 - Atu3059 0.22 -0.3 59,224 + Atu3059 0.25 -0.1 59,227 - Atu3059 0.26 +1.2 59,244 + Atu3059 0.27 -0.7
Or see this region's nucleotide sequence