Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27300

Experiment: R2A outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27290 and ABID97_RS27295 overlap by 17 nucleotidesABID97_RS27295 and ABID97_RS27300 are separated by 94 nucleotidesABID97_RS27300 and ABID97_RS27305 are separated by 120 nucleotides ABID97_RS27290: ABID97_RS27290 - methyltransferase domain-containing protein, at 371,622 to 372,533 _RS27290 ABID97_RS27295: ABID97_RS27295 - SDR family oxidoreductase, at 372,517 to 373,308 _RS27295 ABID97_RS27300: ABID97_RS27300 - alpha/beta hydrolase, at 373,403 to 374,368 _RS27300 ABID97_RS27305: ABID97_RS27305 - LysR family transcriptional regulator, at 374,489 to 375,388 _RS27305 Position (kb) 373 374 375Strain fitness (log2 ratio) -2 -1 0 1at 373.635 kb on + strand, within ABID97_RS27300at 373.636 kb on - strand, within ABID97_RS27300at 373.683 kb on + strand, within ABID97_RS27300at 373.683 kb on + strand, within ABID97_RS27300at 373.755 kb on + strand, within ABID97_RS27300at 373.756 kb on - strand, within ABID97_RS27300at 373.917 kb on + strand, within ABID97_RS27300at 374.508 kb on - strandat 374.508 kb on - strandat 374.904 kb on - strand, within ABID97_RS27305at 375.063 kb on - strand, within ABID97_RS27305at 375.068 kb on + strand, within ABID97_RS27305at 375.270 kb on - strand, within ABID97_RS27305

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A outgrowth control
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373,635 + ABID97_RS27300 0.24 -0.4
373,636 - ABID97_RS27300 0.24 -2.0
373,683 + ABID97_RS27300 0.29 -0.4
373,683 + ABID97_RS27300 0.29 -0.7
373,755 + ABID97_RS27300 0.36 +0.3
373,756 - ABID97_RS27300 0.37 +0.9
373,917 + ABID97_RS27300 0.53 -0.2
374,508 - +0.3
374,508 - +0.8
374,904 - ABID97_RS27305 0.46 -2.7
375,063 - ABID97_RS27305 0.64 -1.3
375,068 + ABID97_RS27305 0.64 -0.7
375,270 - ABID97_RS27305 0.87 -0.3

Or see this region's nucleotide sequence