Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS23975 and ABID97_RS23980 are separated by 23 nucleotides ABID97_RS23980 and ABID97_RS23985 are separated by 28 nucleotides ABID97_RS23985 and ABID97_RS23990 are separated by 122 nucleotides ABID97_RS23990 and ABID97_RS23995 are separated by 15 nucleotides ABID97_RS23995 and ABID97_RS24000 are separated by 72 nucleotides
ABID97_RS23975: ABID97_RS23975 - biotin synthase, at 4,958,643 to 4,959,557
_RS23975
ABID97_RS23980: ABID97_RS23980 - ComF family protein, at 4,959,581 to 4,960,297
_RS23980
ABID97_RS23985: ABID97_RS23985 - tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL, at 4,960,326 to 4,960,787
_RS23985
ABID97_RS23990: ABID97_RS23990 - DUF4148 domain-containing protein, at 4,960,910 to 4,961,203
_RS23990
ABID97_RS23995: ABID97_RS23995 - MaoC family dehydratase, at 4,961,219 to 4,961,680
_RS23995
ABID97_RS24000: ABID97_RS24000 - NAD(P)H-dependent oxidoreductase, at 4,961,753 to 4,962,481
_RS24000
Position (kb) 4960
4961 Strain fitness (log2 ratio) -2
-1
0
1 at 4959.571 kb on + strand at 4959.572 kb on - strand at 4959.572 kb on - strand at 4959.572 kb on - strand at 4959.572 kb on - strand at 4959.572 kb on - strand at 4959.648 kb on + strand at 4959.649 kb on - strand at 4959.649 kb on - strand at 4959.818 kb on + strand, within ABID97_RS23980 at 4959.818 kb on + strand, within ABID97_RS23980 at 4959.818 kb on + strand, within ABID97_RS23980 at 4959.819 kb on - strand, within ABID97_RS23980 at 4959.819 kb on - strand, within ABID97_RS23980 at 4959.819 kb on - strand, within ABID97_RS23980 at 4959.819 kb on - strand, within ABID97_RS23980 at 4959.819 kb on - strand, within ABID97_RS23980 at 4959.819 kb on - strand, within ABID97_RS23980 at 4959.819 kb on - strand, within ABID97_RS23980 at 4959.819 kb on - strand, within ABID97_RS23980 at 4960.476 kb on + strand, within ABID97_RS23985 at 4960.485 kb on + strand, within ABID97_RS23985 at 4960.931 kb on + strand at 4960.931 kb on + strand at 4961.201 kb on + strand at 4961.201 kb on + strand at 4961.201 kb on + strand at 4961.201 kb on + strand at 4961.202 kb on - strand at 4961.202 kb on - strand at 4961.409 kb on + strand, within ABID97_RS23995 at 4961.409 kb on + strand, within ABID97_RS23995 at 4961.455 kb on - strand, within ABID97_RS23995 at 4961.692 kb on + strand at 4961.693 kb on - strand at 4961.742 kb on - strand at 4961.742 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 4,959,571 + +0.3 4,959,572 - +0.3 4,959,572 - +0.1 4,959,572 - -0.8 4,959,572 - -2.1 4,959,572 - -0.5 4,959,648 + +0.9 4,959,649 - -0.3 4,959,649 - +0.2 4,959,818 + ABID97_RS23980 0.33 +0.4 4,959,818 + ABID97_RS23980 0.33 +0.5 4,959,818 + ABID97_RS23980 0.33 +0.4 4,959,819 - ABID97_RS23980 0.33 -0.8 4,959,819 - ABID97_RS23980 0.33 +0.4 4,959,819 - ABID97_RS23980 0.33 +0.8 4,959,819 - ABID97_RS23980 0.33 -0.7 4,959,819 - ABID97_RS23980 0.33 +0.3 4,959,819 - ABID97_RS23980 0.33 +0.1 4,959,819 - ABID97_RS23980 0.33 +0.4 4,959,819 - ABID97_RS23980 0.33 -0.9 4,960,476 + ABID97_RS23985 0.32 -0.5 4,960,485 + ABID97_RS23985 0.34 -1.0 4,960,931 + +0.3 4,960,931 + +0.5 4,961,201 + +0.6 4,961,201 + +0.0 4,961,201 + -0.0 4,961,201 + +0.0 4,961,202 - -0.3 4,961,202 - -1.1 4,961,409 + ABID97_RS23995 0.41 +0.0 4,961,409 + ABID97_RS23995 0.41 +1.1 4,961,455 - ABID97_RS23995 0.51 +0.4 4,961,692 + -0.3 4,961,693 - +0.8 4,961,742 - +0.6 4,961,742 - +0.4
Or see this region's nucleotide sequence