Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03425 and ABID97_RS03430 are separated by 29 nucleotides ABID97_RS03430 and ABID97_RS03435 are separated by 22 nucleotides ABID97_RS03435 and ABID97_RS03440 overlap by 4 nucleotides
ABID97_RS03425: ABID97_RS03425 - urocanate hydratase, at 696,045 to 697,763
_RS03425
ABID97_RS03430: ABID97_RS03430 - HutD family protein, at 697,793 to 698,365
_RS03430
ABID97_RS03435: ABID97_RS03435 - imidazolonepropionase, at 698,388 to 699,614
_RS03435
ABID97_RS03440: ABID97_RS03440 - formimidoylglutamate deiminase, at 699,611 to 701,023
_RS03440
Position (kb) 698
699
700 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 698.662 kb on - strand, within ABID97_RS03435 at 698.662 kb on - strand, within ABID97_RS03435 at 698.662 kb on - strand, within ABID97_RS03435 at 698.950 kb on - strand, within ABID97_RS03435 at 699.255 kb on + strand, within ABID97_RS03435 at 699.255 kb on + strand, within ABID97_RS03435 at 699.255 kb on + strand, within ABID97_RS03435 at 699.255 kb on + strand, within ABID97_RS03435 at 699.256 kb on - strand, within ABID97_RS03435 at 699.872 kb on + strand, within ABID97_RS03440 at 699.872 kb on + strand, within ABID97_RS03440 at 699.873 kb on - strand, within ABID97_RS03440 at 699.873 kb on - strand, within ABID97_RS03440 at 699.977 kb on + strand, within ABID97_RS03440 at 699.978 kb on - strand, within ABID97_RS03440 at 700.007 kb on + strand, within ABID97_RS03440
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 698,662 - ABID97_RS03435 0.22 -0.9 698,662 - ABID97_RS03435 0.22 -1.0 698,662 - ABID97_RS03435 0.22 +0.1 698,950 - ABID97_RS03435 0.46 -0.1 699,255 + ABID97_RS03435 0.71 +0.0 699,255 + ABID97_RS03435 0.71 -0.3 699,255 + ABID97_RS03435 0.71 -1.4 699,255 + ABID97_RS03435 0.71 +0.6 699,256 - ABID97_RS03435 0.71 -0.4 699,872 + ABID97_RS03440 0.18 +0.0 699,872 + ABID97_RS03440 0.18 -0.6 699,873 - ABID97_RS03440 0.19 -0.0 699,873 - ABID97_RS03440 0.19 +0.3 699,977 + ABID97_RS03440 0.26 -0.6 699,978 - ABID97_RS03440 0.26 -0.3 700,007 + ABID97_RS03440 0.28 -3.2
Or see this region's nucleotide sequence