Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03130 and ABID97_RS03135 are separated by 59 nucleotides ABID97_RS03135 and ABID97_RS03140 are separated by 235 nucleotides ABID97_RS03140 and ABID97_RS03145 are separated by 51 nucleotides ABID97_RS03145 and ABID97_RS03150 are separated by 20 nucleotides ABID97_RS03150 and ABID97_RS03155 are separated by 32 nucleotides
ABID97_RS03130: ABID97_RS03130 - MaoC family dehydratase, at 635,649 to 636,104
_RS03130
ABID97_RS03135: ABID97_RS03135 - adhesin, at 636,164 to 636,685
_RS03135
ABID97_RS03140: ABID97_RS03140 - tRNA-Gly, at 636,921 to 636,996
_RS03140
ABID97_RS03145: ABID97_RS03145 - fumarylacetoacetase, at 637,048 to 638,379
_RS03145
ABID97_RS03150: ABID97_RS03150 - cyclase family protein, at 638,400 to 639,206
_RS03150
ABID97_RS03155: ABID97_RS03155 - ABC transporter permease, at 639,239 to 640,027
_RS03155
Position (kb) 637
638
639 Strain fitness (log2 ratio) -1
0
1
2 at 636.165 kb on + strand at 636.166 kb on - strand at 636.166 kb on - strand at 636.166 kb on - strand at 636.166 kb on - strand at 636.685 kb on + strand at 636.685 kb on + strand at 636.685 kb on + strand at 636.685 kb on + strand at 636.685 kb on + strand at 636.685 kb on + strand at 636.685 kb on + strand at 636.685 kb on + strand at 636.686 kb on - strand at 636.686 kb on - strand at 636.686 kb on - strand at 636.686 kb on - strand at 636.758 kb on - strand at 636.758 kb on - strand at 636.849 kb on + strand at 636.901 kb on + strand at 636.901 kb on + strand at 636.902 kb on - strand at 636.902 kb on - strand at 636.902 kb on - strand at 636.902 kb on - strand at 636.904 kb on - strand at 636.929 kb on - strand, within ABID97_RS03140 at 637.346 kb on + strand, within ABID97_RS03145 at 637.346 kb on + strand, within ABID97_RS03145 at 637.346 kb on + strand, within ABID97_RS03145 at 637.347 kb on - strand, within ABID97_RS03145 at 637.347 kb on - strand, within ABID97_RS03145 at 637.347 kb on - strand, within ABID97_RS03145 at 637.347 kb on - strand, within ABID97_RS03145 at 637.479 kb on - strand, within ABID97_RS03145 at 637.772 kb on + strand, within ABID97_RS03145 at 637.773 kb on - strand, within ABID97_RS03145 at 637.773 kb on - strand, within ABID97_RS03145 at 637.865 kb on + strand, within ABID97_RS03145 at 637.866 kb on - strand, within ABID97_RS03145 at 637.956 kb on - strand, within ABID97_RS03145 at 637.956 kb on - strand, within ABID97_RS03145 at 637.994 kb on + strand, within ABID97_RS03145 at 637.994 kb on + strand, within ABID97_RS03145 at 637.994 kb on + strand, within ABID97_RS03145 at 637.995 kb on - strand, within ABID97_RS03145 at 637.995 kb on - strand, within ABID97_RS03145 at 638.692 kb on + strand, within ABID97_RS03150 at 638.692 kb on + strand, within ABID97_RS03150 at 638.692 kb on + strand, within ABID97_RS03150 at 638.693 kb on - strand, within ABID97_RS03150 at 638.707 kb on + strand, within ABID97_RS03150 at 638.734 kb on + strand, within ABID97_RS03150 at 638.734 kb on + strand, within ABID97_RS03150 at 638.851 kb on + strand, within ABID97_RS03150 at 638.851 kb on + strand, within ABID97_RS03150 at 639.100 kb on + strand, within ABID97_RS03150 at 639.101 kb on - strand, within ABID97_RS03150 at 639.121 kb on + strand, within ABID97_RS03150 at 639.122 kb on - strand, within ABID97_RS03150
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 636,165 + +0.6 636,166 - -0.0 636,166 - +0.5 636,166 - +1.2 636,166 - -0.8 636,685 + -0.3 636,685 + +0.2 636,685 + -0.6 636,685 + -1.2 636,685 + -0.3 636,685 + +0.4 636,685 + +0.0 636,685 + +0.0 636,686 - +0.1 636,686 - -0.8 636,686 - -0.4 636,686 - -0.3 636,758 - -0.5 636,758 - -0.4 636,849 + +0.8 636,901 + -0.5 636,901 + -0.4 636,902 - -0.1 636,902 - +0.0 636,902 - +2.2 636,902 - +0.8 636,904 - -0.9 636,929 - ABID97_RS03140 0.11 +0.4 637,346 + ABID97_RS03145 0.22 +0.4 637,346 + ABID97_RS03145 0.22 -0.1 637,346 + ABID97_RS03145 0.22 +0.0 637,347 - ABID97_RS03145 0.22 -0.9 637,347 - ABID97_RS03145 0.22 +0.3 637,347 - ABID97_RS03145 0.22 +0.1 637,347 - ABID97_RS03145 0.22 +0.7 637,479 - ABID97_RS03145 0.32 +0.2 637,772 + ABID97_RS03145 0.54 -0.7 637,773 - ABID97_RS03145 0.54 -0.5 637,773 - ABID97_RS03145 0.54 +0.3 637,865 + ABID97_RS03145 0.61 +1.2 637,866 - ABID97_RS03145 0.61 +0.2 637,956 - ABID97_RS03145 0.68 -0.0 637,956 - ABID97_RS03145 0.68 +0.4 637,994 + ABID97_RS03145 0.71 -0.6 637,994 + ABID97_RS03145 0.71 +0.2 637,994 + ABID97_RS03145 0.71 +0.1 637,995 - ABID97_RS03145 0.71 +0.0 637,995 - ABID97_RS03145 0.71 +0.2 638,692 + ABID97_RS03150 0.36 +0.3 638,692 + ABID97_RS03150 0.36 +0.3 638,692 + ABID97_RS03150 0.36 +0.1 638,693 - ABID97_RS03150 0.36 -0.4 638,707 + ABID97_RS03150 0.38 +1.0 638,734 + ABID97_RS03150 0.41 -1.2 638,734 + ABID97_RS03150 0.41 -0.3 638,851 + ABID97_RS03150 0.56 -0.5 638,851 + ABID97_RS03150 0.56 +1.1 639,100 + ABID97_RS03150 0.87 +0.2 639,101 - ABID97_RS03150 0.87 +1.2 639,121 + ABID97_RS03150 0.89 -1.0 639,122 - ABID97_RS03150 0.89 +0.6
Or see this region's nucleotide sequence