Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02920 and ABID97_RS02925 are separated by 40 nucleotides ABID97_RS02925 and ABID97_RS02930 overlap by 1 nucleotides ABID97_RS02930 and ABID97_RS02935 are separated by 104 nucleotides
ABID97_RS02920: ABID97_RS02920 - ParA family protein, at 595,696 to 596,610
_RS02920
ABID97_RS02925: ABID97_RS02925 - alpha/beta hydrolase, at 596,651 to 597,199
_RS02925
ABID97_RS02930: ABID97_RS02930 - ParB/RepB/Spo0J family partition protein, at 597,199 to 598,146
_RS02930
ABID97_RS02935: ABID97_RS02935 - CsgG/HfaB family protein, at 598,251 to 599,147
_RS02935
Position (kb) 597
598
599 Strain fitness (log2 ratio) -1
0
1
2
3 at 596.736 kb on - strand, within ABID97_RS02925 at 596.922 kb on + strand, within ABID97_RS02925 at 596.922 kb on + strand, within ABID97_RS02925 at 596.922 kb on + strand, within ABID97_RS02925 at 596.923 kb on - strand, within ABID97_RS02925 at 596.923 kb on - strand, within ABID97_RS02925 at 597.019 kb on - strand, within ABID97_RS02925 at 597.045 kb on - strand, within ABID97_RS02925 at 597.045 kb on - strand, within ABID97_RS02925 at 597.045 kb on - strand, within ABID97_RS02925 at 597.168 kb on + strand at 597.168 kb on + strand at 597.169 kb on - strand at 597.169 kb on - strand at 597.169 kb on - strand at 597.169 kb on - strand at 597.169 kb on - strand at 598.144 kb on + strand at 598.144 kb on + strand at 598.144 kb on + strand at 598.144 kb on + strand at 598.144 kb on + strand at 598.145 kb on - strand at 598.145 kb on - strand at 598.145 kb on - strand at 598.196 kb on + strand at 598.197 kb on - strand at 598.230 kb on - strand at 598.230 kb on - strand at 598.473 kb on + strand, within ABID97_RS02935 at 598.473 kb on + strand, within ABID97_RS02935 at 598.473 kb on + strand, within ABID97_RS02935 at 598.474 kb on - strand, within ABID97_RS02935 at 598.941 kb on + strand, within ABID97_RS02935 at 598.942 kb on - strand, within ABID97_RS02935 at 599.022 kb on + strand, within ABID97_RS02935 at 599.022 kb on + strand, within ABID97_RS02935 at 599.022 kb on + strand, within ABID97_RS02935 at 599.022 kb on + strand, within ABID97_RS02935 at 599.022 kb on + strand, within ABID97_RS02935 at 599.022 kb on + strand, within ABID97_RS02935 at 599.022 kb on + strand, within ABID97_RS02935 at 599.023 kb on - strand, within ABID97_RS02935 at 599.023 kb on - strand, within ABID97_RS02935 at 599.023 kb on - strand, within ABID97_RS02935 at 599.023 kb on - strand, within ABID97_RS02935 at 599.023 kb on - strand, within ABID97_RS02935 at 599.023 kb on - strand, within ABID97_RS02935 at 599.023 kb on - strand, within ABID97_RS02935 at 599.023 kb on - strand, within ABID97_RS02935 at 599.023 kb on - strand, within ABID97_RS02935 at 599.023 kb on - strand, within ABID97_RS02935 at 599.023 kb on - strand, within ABID97_RS02935 at 599.023 kb on - strand, within ABID97_RS02935 at 599.106 kb on + strand at 599.106 kb on + strand at 599.106 kb on + strand at 599.106 kb on + strand at 599.106 kb on + strand at 599.107 kb on - strand at 599.107 kb on - strand at 599.107 kb on - strand at 599.107 kb on - strand at 599.107 kb on - strand at 599.145 kb on + strand at 599.145 kb on + strand at 599.145 kb on + strand at 599.145 kb on + strand at 599.145 kb on + strand at 599.146 kb on - strand at 599.146 kb on - strand at 599.146 kb on - strand at 599.146 kb on - strand at 599.146 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 596,736 - ABID97_RS02925 0.15 +0.6 596,922 + ABID97_RS02925 0.49 -0.4 596,922 + ABID97_RS02925 0.49 -0.1 596,922 + ABID97_RS02925 0.49 +0.1 596,923 - ABID97_RS02925 0.50 +0.1 596,923 - ABID97_RS02925 0.50 +1.2 597,019 - ABID97_RS02925 0.67 +0.8 597,045 - ABID97_RS02925 0.72 -0.8 597,045 - ABID97_RS02925 0.72 +0.5 597,045 - ABID97_RS02925 0.72 +0.4 597,168 + +0.2 597,168 + -0.1 597,169 - +0.3 597,169 - +0.1 597,169 - -0.2 597,169 - +0.6 597,169 - +0.0 598,144 + -0.1 598,144 + +0.5 598,144 + +1.3 598,144 + +0.2 598,144 + -1.5 598,145 - +0.2 598,145 - +0.2 598,145 - +0.3 598,196 + +0.6 598,197 - -0.1 598,230 - -0.1 598,230 - +0.1 598,473 + ABID97_RS02935 0.25 -0.3 598,473 + ABID97_RS02935 0.25 +0.0 598,473 + ABID97_RS02935 0.25 +0.4 598,474 - ABID97_RS02935 0.25 +0.2 598,941 + ABID97_RS02935 0.77 +1.5 598,942 - ABID97_RS02935 0.77 -0.3 599,022 + ABID97_RS02935 0.86 +0.2 599,022 + ABID97_RS02935 0.86 -0.5 599,022 + ABID97_RS02935 0.86 -0.0 599,022 + ABID97_RS02935 0.86 +0.2 599,022 + ABID97_RS02935 0.86 -0.5 599,022 + ABID97_RS02935 0.86 +0.0 599,022 + ABID97_RS02935 0.86 -0.1 599,023 - ABID97_RS02935 0.86 -0.1 599,023 - ABID97_RS02935 0.86 +0.1 599,023 - ABID97_RS02935 0.86 +0.3 599,023 - ABID97_RS02935 0.86 -0.1 599,023 - ABID97_RS02935 0.86 -0.6 599,023 - ABID97_RS02935 0.86 +0.3 599,023 - ABID97_RS02935 0.86 +0.2 599,023 - ABID97_RS02935 0.86 +1.4 599,023 - ABID97_RS02935 0.86 +2.8 599,023 - ABID97_RS02935 0.86 +0.6 599,023 - ABID97_RS02935 0.86 -0.5 599,023 - ABID97_RS02935 0.86 +0.6 599,106 + -0.1 599,106 + -0.6 599,106 + -0.3 599,106 + -0.1 599,106 + -0.3 599,107 - +0.4 599,107 - +0.2 599,107 - +0.5 599,107 - -1.6 599,107 - -0.1 599,145 + +0.6 599,145 + -0.1 599,145 + -0.6 599,145 + +0.2 599,145 + +0.4 599,146 - +0.9 599,146 - +0.3 599,146 - -0.0 599,146 - -0.3 599,146 - +0.7
Or see this region's nucleotide sequence