Experiment: toluene 2.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjiN and yjiO are separated by 40 nucleotides yjiO and yjiP are separated by 478 nucleotides
b4336: yjiN - conserved inner membrane protein (NCBI), at 4,563,989 to 4,565,269
yjiN
b4337: yjiO - multidrug efflux system protein (NCBI), at 4,565,310 to 4,566,542
yjiO
b4339: yjiP - predicted transposase (RefSeq), at 4,567,021 to 4,567,941
yjiP
Position (kb)
4565
4566
4567 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4564.364 kb on - strand, within yjiN at 4564.466 kb on + strand, within yjiN at 4564.468 kb on + strand, within yjiN at 4564.468 kb on + strand, within yjiN at 4564.470 kb on + strand, within yjiN at 4564.566 kb on + strand, within yjiN at 4564.574 kb on - strand, within yjiN at 4564.579 kb on - strand, within yjiN at 4564.607 kb on + strand, within yjiN at 4564.650 kb on + strand, within yjiN at 4564.650 kb on + strand, within yjiN at 4564.682 kb on - strand, within yjiN at 4564.720 kb on + strand, within yjiN at 4564.740 kb on + strand, within yjiN at 4564.890 kb on - strand, within yjiN at 4565.205 kb on - strand at 4565.365 kb on + strand at 4565.365 kb on + strand at 4565.485 kb on - strand, within yjiO at 4565.485 kb on - strand, within yjiO at 4565.494 kb on - strand, within yjiO at 4565.598 kb on + strand, within yjiO at 4565.598 kb on + strand, within yjiO at 4565.623 kb on + strand, within yjiO at 4565.640 kb on + strand, within yjiO at 4565.778 kb on - strand, within yjiO at 4565.778 kb on - strand, within yjiO at 4566.224 kb on + strand, within yjiO at 4566.273 kb on - strand, within yjiO at 4566.273 kb on - strand, within yjiO at 4566.322 kb on - strand, within yjiO at 4566.363 kb on - strand, within yjiO at 4566.371 kb on + strand, within yjiO at 4566.447 kb on + strand at 4566.447 kb on + strand at 4566.470 kb on + strand at 4566.470 kb on + strand at 4566.560 kb on - strand at 4566.613 kb on + strand at 4566.617 kb on + strand at 4566.655 kb on + strand at 4566.665 kb on + strand at 4566.666 kb on + strand at 4566.669 kb on + strand at 4566.673 kb on + strand at 4566.673 kb on + strand at 4566.682 kb on + strand at 4566.682 kb on + strand at 4566.834 kb on + strand at 4566.834 kb on + strand at 4566.860 kb on - strand at 4566.865 kb on + strand at 4566.865 kb on - strand at 4566.866 kb on + strand at 4566.894 kb on + strand at 4566.894 kb on + strand at 4566.968 kb on + strand at 4566.968 kb on + strand at 4566.988 kb on - strand at 4567.039 kb on + strand at 4567.043 kb on - strand at 4567.046 kb on - strand at 4567.048 kb on - strand at 4567.080 kb on + strand at 4567.080 kb on + strand at 4567.080 kb on + strand at 4567.080 kb on + strand at 4567.080 kb on + strand at 4567.080 kb on + strand at 4567.080 kb on + strand at 4567.080 kb on + strand at 4567.080 kb on + strand at 4567.080 kb on + strand at 4567.080 kb on + strand at 4567.080 kb on + strand at 4567.088 kb on - strand at 4567.088 kb on - strand at 4567.088 kb on - strand at 4567.105 kb on + strand at 4567.137 kb on + strand, within yjiP at 4567.137 kb on + strand, within yjiP at 4567.195 kb on + strand, within yjiP at 4567.195 kb on + strand, within yjiP at 4567.197 kb on + strand, within yjiP at 4567.246 kb on - strand, within yjiP at 4567.265 kb on + strand, within yjiP at 4567.296 kb on - strand, within yjiP at 4567.308 kb on + strand, within yjiP at 4567.334 kb on + strand, within yjiP at 4567.337 kb on + strand, within yjiP at 4567.344 kb on + strand, within yjiP at 4567.344 kb on + strand, within yjiP at 4567.345 kb on - strand, within yjiP at 4567.345 kb on - strand, within yjiP at 4567.366 kb on - strand, within yjiP at 4567.406 kb on + strand, within yjiP at 4567.418 kb on + strand, within yjiP at 4567.491 kb on + strand, within yjiP at 4567.508 kb on + strand, within yjiP at 4567.508 kb on + strand, within yjiP at 4567.523 kb on + strand, within yjiP at 4567.523 kb on + strand, within yjiP at 4567.525 kb on + strand, within yjiP
Per-strain Table
Position Strand Gene LocusTag Fraction toluene 2.5 vol% remove 4,564,364 - yjiN b4336 0.29 +0.4 4,564,466 + yjiN b4336 0.37 -0.4 4,564,468 + yjiN b4336 0.37 -0.4 4,564,468 + yjiN b4336 0.37 +0.3 4,564,470 + yjiN b4336 0.38 -2.3 4,564,566 + yjiN b4336 0.45 +0.1 4,564,574 - yjiN b4336 0.46 +0.7 4,564,579 - yjiN b4336 0.46 +1.7 4,564,607 + yjiN b4336 0.48 -1.2 4,564,650 + yjiN b4336 0.52 +1.4 4,564,650 + yjiN b4336 0.52 +2.0 4,564,682 - yjiN b4336 0.54 -2.0 4,564,720 + yjiN b4336 0.57 -0.2 4,564,740 + yjiN b4336 0.59 +0.6 4,564,890 - yjiN b4336 0.70 -0.6 4,565,205 - -1.8 4,565,365 + -0.6 4,565,365 + +1.0 4,565,485 - yjiO b4337 0.14 -0.7 4,565,485 - yjiO b4337 0.14 -1.0 4,565,494 - yjiO b4337 0.15 -0.4 4,565,598 + yjiO b4337 0.23 -0.0 4,565,598 + yjiO b4337 0.23 -0.2 4,565,623 + yjiO b4337 0.25 +0.4 4,565,640 + yjiO b4337 0.27 +0.7 4,565,778 - yjiO b4337 0.38 -1.8 4,565,778 - yjiO b4337 0.38 -0.6 4,566,224 + yjiO b4337 0.74 +0.0 4,566,273 - yjiO b4337 0.78 -1.5 4,566,273 - yjiO b4337 0.78 +1.0 4,566,322 - yjiO b4337 0.82 -0.4 4,566,363 - yjiO b4337 0.85 -0.3 4,566,371 + yjiO b4337 0.86 +0.8 4,566,447 + -0.5 4,566,447 + -0.0 4,566,470 + -1.0 4,566,470 + +1.0 4,566,560 - +1.2 4,566,613 + -0.1 4,566,617 + +0.2 4,566,655 + -0.2 4,566,665 + -0.2 4,566,666 + -0.1 4,566,669 + -1.4 4,566,673 + -0.1 4,566,673 + +1.0 4,566,682 + +0.6 4,566,682 + -0.2 4,566,834 + +0.4 4,566,834 + -1.3 4,566,860 - -0.0 4,566,865 + -0.6 4,566,865 - +0.2 4,566,866 + -0.3 4,566,894 + -1.4 4,566,894 + -0.7 4,566,968 + +0.5 4,566,968 + -0.6 4,566,988 - +0.9 4,567,039 + +0.4 4,567,043 - +0.5 4,567,046 - +0.4 4,567,048 - -0.2 4,567,080 + +0.2 4,567,080 + -0.1 4,567,080 + +0.8 4,567,080 + +0.4 4,567,080 + +0.1 4,567,080 + +1.5 4,567,080 + +0.1 4,567,080 + +0.3 4,567,080 + +0.1 4,567,080 + -0.6 4,567,080 + -1.4 4,567,080 + +0.1 4,567,088 - +0.7 4,567,088 - -0.3 4,567,088 - -0.9 4,567,105 + -0.9 4,567,137 + yjiP b4339 0.13 +0.1 4,567,137 + yjiP b4339 0.13 -0.8 4,567,195 + yjiP b4339 0.19 +1.1 4,567,195 + yjiP b4339 0.19 -0.5 4,567,197 + yjiP b4339 0.19 +1.3 4,567,246 - yjiP b4339 0.24 -1.4 4,567,265 + yjiP b4339 0.26 +0.3 4,567,296 - yjiP b4339 0.30 +0.9 4,567,308 + yjiP b4339 0.31 +0.2 4,567,334 + yjiP b4339 0.34 +0.4 4,567,337 + yjiP b4339 0.34 +0.0 4,567,344 + yjiP b4339 0.35 +0.4 4,567,344 + yjiP b4339 0.35 -0.8 4,567,345 - yjiP b4339 0.35 +0.3 4,567,345 - yjiP b4339 0.35 +0.5 4,567,366 - yjiP b4339 0.37 -0.4 4,567,406 + yjiP b4339 0.42 +0.8 4,567,418 + yjiP b4339 0.43 +0.0 4,567,491 + yjiP b4339 0.51 +0.4 4,567,508 + yjiP b4339 0.53 +1.0 4,567,508 + yjiP b4339 0.53 -1.7 4,567,523 + yjiP b4339 0.55 -0.5 4,567,523 + yjiP b4339 0.55 -0.1 4,567,525 + yjiP b4339 0.55 -0.5
Or see this region's nucleotide sequence