Experiment: toluene 2.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hisM and hisQ overlap by 4 nucleotides hisQ and hisJ are separated by 89 nucleotides hisJ and argT are separated by 220 nucleotides
b2307: hisM - histidine/lysine/arginine/ornithine transporter subunit (NCBI), at 2,422,539 to 2,423,255
hisM
b2308: hisQ - histidine/lysine/arginine/ornithine transporter subunit (NCBI), at 2,423,252 to 2,423,938
hisQ
b2309: hisJ - histidine/lysine/arginine/ornithine transporter subunit (NCBI), at 2,424,028 to 2,424,810
hisJ
b2310: argT - lysine/arginine/ornithine transporter subunit (NCBI), at 2,425,031 to 2,425,813
argT
Position (kb)
2424
2425 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2423.038 kb on + strand, within hisM at 2423.041 kb on - strand, within hisM at 2423.145 kb on + strand, within hisM at 2423.145 kb on + strand, within hisM at 2423.199 kb on - strand at 2423.199 kb on - strand at 2423.233 kb on - strand at 2423.240 kb on - strand at 2423.240 kb on - strand at 2423.265 kb on - strand at 2423.265 kb on - strand at 2423.267 kb on + strand at 2423.280 kb on + strand at 2423.280 kb on + strand at 2423.310 kb on - strand at 2423.310 kb on - strand at 2423.346 kb on + strand, within hisQ at 2423.421 kb on - strand, within hisQ at 2423.426 kb on + strand, within hisQ at 2423.490 kb on + strand, within hisQ at 2423.566 kb on + strand, within hisQ at 2423.572 kb on - strand, within hisQ at 2423.641 kb on + strand, within hisQ at 2423.670 kb on + strand, within hisQ at 2423.696 kb on + strand, within hisQ at 2423.696 kb on + strand, within hisQ at 2423.702 kb on - strand, within hisQ at 2423.702 kb on - strand, within hisQ at 2423.752 kb on - strand, within hisQ at 2423.779 kb on + strand, within hisQ at 2423.786 kb on - strand, within hisQ at 2423.830 kb on - strand, within hisQ at 2423.830 kb on - strand, within hisQ at 2423.866 kb on + strand, within hisQ at 2423.866 kb on + strand, within hisQ at 2423.866 kb on + strand, within hisQ at 2423.866 kb on + strand, within hisQ at 2423.866 kb on + strand, within hisQ at 2423.940 kb on + strand at 2424.014 kb on - strand at 2424.158 kb on - strand, within hisJ at 2424.158 kb on - strand, within hisJ at 2424.158 kb on - strand, within hisJ at 2424.239 kb on - strand, within hisJ at 2424.383 kb on + strand, within hisJ at 2424.384 kb on - strand, within hisJ at 2424.406 kb on - strand, within hisJ at 2424.863 kb on - strand at 2425.153 kb on + strand, within argT at 2425.153 kb on + strand, within argT at 2425.161 kb on - strand, within argT at 2425.161 kb on - strand, within argT at 2425.253 kb on + strand, within argT at 2425.280 kb on + strand, within argT at 2425.286 kb on - strand, within argT at 2425.319 kb on - strand, within argT at 2425.339 kb on - strand, within argT at 2425.353 kb on - strand, within argT at 2425.353 kb on - strand, within argT at 2425.387 kb on - strand, within argT at 2425.387 kb on - strand, within argT at 2425.402 kb on - strand, within argT at 2425.543 kb on + strand, within argT at 2425.702 kb on + strand, within argT at 2425.705 kb on - strand, within argT at 2425.732 kb on - strand, within argT at 2425.742 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction toluene 2.5 vol% remove 2,423,038 + hisM b2307 0.70 -0.2 2,423,041 - hisM b2307 0.70 +0.0 2,423,145 + hisM b2307 0.85 +1.7 2,423,145 + hisM b2307 0.85 +0.5 2,423,199 - +0.2 2,423,199 - -1.3 2,423,233 - -0.4 2,423,240 - -1.2 2,423,240 - +0.0 2,423,265 - -1.4 2,423,265 - -0.5 2,423,267 + -0.0 2,423,280 + -0.1 2,423,280 + +0.2 2,423,310 - -1.5 2,423,310 - +1.4 2,423,346 + hisQ b2308 0.14 +0.5 2,423,421 - hisQ b2308 0.25 +0.5 2,423,426 + hisQ b2308 0.25 +0.4 2,423,490 + hisQ b2308 0.35 -0.1 2,423,566 + hisQ b2308 0.46 -0.4 2,423,572 - hisQ b2308 0.47 +0.5 2,423,641 + hisQ b2308 0.57 -0.8 2,423,670 + hisQ b2308 0.61 +0.3 2,423,696 + hisQ b2308 0.65 +0.8 2,423,696 + hisQ b2308 0.65 +0.8 2,423,702 - hisQ b2308 0.66 -0.8 2,423,702 - hisQ b2308 0.66 -0.6 2,423,752 - hisQ b2308 0.73 -0.6 2,423,779 + hisQ b2308 0.77 +0.4 2,423,786 - hisQ b2308 0.78 +0.5 2,423,830 - hisQ b2308 0.84 -0.8 2,423,830 - hisQ b2308 0.84 -0.9 2,423,866 + hisQ b2308 0.89 -0.2 2,423,866 + hisQ b2308 0.89 -0.4 2,423,866 + hisQ b2308 0.89 +0.2 2,423,866 + hisQ b2308 0.89 -0.5 2,423,866 + hisQ b2308 0.89 +0.5 2,423,940 + -0.5 2,424,014 - +0.7 2,424,158 - hisJ b2309 0.17 +2.3 2,424,158 - hisJ b2309 0.17 +1.9 2,424,158 - hisJ b2309 0.17 +1.2 2,424,239 - hisJ b2309 0.27 +0.4 2,424,383 + hisJ b2309 0.45 +1.3 2,424,384 - hisJ b2309 0.45 +0.6 2,424,406 - hisJ b2309 0.48 +1.5 2,424,863 - -0.4 2,425,153 + argT b2310 0.16 +1.8 2,425,153 + argT b2310 0.16 -0.7 2,425,161 - argT b2310 0.17 +0.5 2,425,161 - argT b2310 0.17 -0.5 2,425,253 + argT b2310 0.28 -0.2 2,425,280 + argT b2310 0.32 -0.2 2,425,286 - argT b2310 0.33 -1.1 2,425,319 - argT b2310 0.37 -0.5 2,425,339 - argT b2310 0.39 +3.7 2,425,353 - argT b2310 0.41 -0.5 2,425,353 - argT b2310 0.41 -1.1 2,425,387 - argT b2310 0.45 +1.7 2,425,387 - argT b2310 0.45 +0.4 2,425,402 - argT b2310 0.47 -0.4 2,425,543 + argT b2310 0.65 +0.6 2,425,702 + argT b2310 0.86 -0.1 2,425,705 - argT b2310 0.86 -0.2 2,425,732 - argT b2310 0.90 -0.2 2,425,742 - -0.2
Or see this region's nucleotide sequence