Experiment: toluene 2.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yccW and yccX are separated by 94 nucleotides yccX and yccK overlap by 4 nucleotides yccK and yccA are separated by 90 nucleotides
b0967: yccW - predicted methyltransferase (RefSeq), at 1,028,002 to 1,029,192
yccW
b0968: yccX - predicted acylphosphatase (NCBI), at 1,029,287 to 1,029,565
yccX
b0969: yccK - putative sulfite reductase (EC 1.8.-.-) (VIMSS), at 1,029,562 to 1,029,891
yccK
b0970: yccA - inner membrane protein (NCBI), at 1,029,982 to 1,030,641
yccA
Position (kb)
1029
1030 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1028.328 kb on + strand, within yccW at 1028.328 kb on + strand, within yccW at 1028.373 kb on - strand, within yccW at 1028.378 kb on - strand, within yccW at 1028.378 kb on - strand, within yccW at 1028.425 kb on - strand, within yccW at 1028.478 kb on + strand, within yccW at 1028.509 kb on - strand, within yccW at 1028.579 kb on - strand, within yccW at 1028.579 kb on - strand, within yccW at 1028.619 kb on + strand, within yccW at 1028.685 kb on - strand, within yccW at 1028.796 kb on + strand, within yccW at 1028.796 kb on + strand, within yccW at 1028.841 kb on + strand, within yccW at 1028.846 kb on + strand, within yccW at 1028.901 kb on - strand, within yccW at 1028.975 kb on + strand, within yccW at 1028.984 kb on - strand, within yccW at 1029.155 kb on - strand at 1029.171 kb on - strand at 1029.269 kb on + strand at 1029.273 kb on - strand at 1029.273 kb on - strand at 1029.279 kb on - strand at 1029.322 kb on - strand, within yccX at 1029.322 kb on - strand, within yccX at 1029.343 kb on + strand, within yccX at 1029.348 kb on + strand, within yccX at 1029.477 kb on - strand, within yccX at 1029.477 kb on - strand, within yccX at 1029.501 kb on + strand, within yccX at 1029.529 kb on - strand, within yccX at 1029.529 kb on - strand, within yccX at 1029.860 kb on + strand at 1029.960 kb on + strand at 1029.980 kb on + strand at 1029.980 kb on + strand at 1030.084 kb on + strand, within yccA at 1030.154 kb on + strand, within yccA at 1030.275 kb on + strand, within yccA at 1030.314 kb on + strand, within yccA at 1030.314 kb on + strand, within yccA at 1030.322 kb on - strand, within yccA at 1030.322 kb on - strand, within yccA at 1030.556 kb on - strand, within yccA
Per-strain Table
Position Strand Gene LocusTag Fraction toluene 2.5 vol% remove 1,028,328 + yccW b0967 0.27 +0.9 1,028,328 + yccW b0967 0.27 +0.5 1,028,373 - yccW b0967 0.31 -0.9 1,028,378 - yccW b0967 0.32 -0.7 1,028,378 - yccW b0967 0.32 -0.5 1,028,425 - yccW b0967 0.36 -1.3 1,028,478 + yccW b0967 0.40 +0.4 1,028,509 - yccW b0967 0.43 -0.3 1,028,579 - yccW b0967 0.48 -0.7 1,028,579 - yccW b0967 0.48 +0.5 1,028,619 + yccW b0967 0.52 +0.5 1,028,685 - yccW b0967 0.57 -0.3 1,028,796 + yccW b0967 0.67 +0.9 1,028,796 + yccW b0967 0.67 -0.7 1,028,841 + yccW b0967 0.70 +0.8 1,028,846 + yccW b0967 0.71 +0.2 1,028,901 - yccW b0967 0.75 +0.4 1,028,975 + yccW b0967 0.82 +0.1 1,028,984 - yccW b0967 0.82 +1.2 1,029,155 - +0.8 1,029,171 - +1.2 1,029,269 + -2.8 1,029,273 - -1.3 1,029,273 - -0.4 1,029,279 - +1.6 1,029,322 - yccX b0968 0.13 +1.3 1,029,322 - yccX b0968 0.13 -0.8 1,029,343 + yccX b0968 0.20 -0.4 1,029,348 + yccX b0968 0.22 -0.4 1,029,477 - yccX b0968 0.68 -1.4 1,029,477 - yccX b0968 0.68 -0.8 1,029,501 + yccX b0968 0.77 -2.4 1,029,529 - yccX b0968 0.87 -0.5 1,029,529 - yccX b0968 0.87 -0.6 1,029,860 + -1.5 1,029,960 + -1.4 1,029,980 + +0.8 1,029,980 + +0.3 1,030,084 + yccA b0970 0.15 -0.8 1,030,154 + yccA b0970 0.26 -0.3 1,030,275 + yccA b0970 0.44 +0.4 1,030,314 + yccA b0970 0.50 +0.1 1,030,314 + yccA b0970 0.50 -1.1 1,030,322 - yccA b0970 0.52 +1.1 1,030,322 - yccA b0970 0.52 -0.2 1,030,556 - yccA b0970 0.87 -1.3
Or see this region's nucleotide sequence