Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF764

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt new) 0.075 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF763 and GFF764 are separated by 282 nucleotidesGFF764 and GFF765 are separated by 29 nucleotidesGFF765 and GFF766 are separated by 9 nucleotides GFF763 - 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-), at 120,177 to 121,307 GFF763 GFF764 - Ascorbate-specific PTS system, EIIC component, at 121,590 to 122,933 GFF764 GFF765 - Putative phosphotransferase enzyme II, B component, at 122,963 to 123,283 GFF765 GFF766 - Choline-sulfatase (EC 3.1.6.6), at 123,293 to 124,780 GFF766 Position (kb) 121 122 123Strain fitness (log2 ratio) -1 0 1at 120.590 kb on - strand, within GFF763at 120.689 kb on + strand, within GFF763at 120.704 kb on + strand, within GFF763at 120.821 kb on + strand, within GFF763at 120.838 kb on + strand, within GFF763at 120.839 kb on - strand, within GFF763at 121.093 kb on + strand, within GFF763at 122.029 kb on + strand, within GFF764at 122.123 kb on + strand, within GFF764at 122.129 kb on + strand, within GFF764at 122.159 kb on + strand, within GFF764at 122.172 kb on - strand, within GFF764at 122.372 kb on - strand, within GFF764at 122.400 kb on + strand, within GFF764at 122.406 kb on + strand, within GFF764at 122.407 kb on - strand, within GFF764at 122.439 kb on + strand, within GFF764at 122.439 kb on + strand, within GFF764at 122.439 kb on + strand, within GFF764at 122.439 kb on + strand, within GFF764at 123.329 kb on - strandat 123.415 kb on + strandat 123.416 kb on - strandat 123.419 kb on + strandat 123.419 kb on + strandat 123.439 kb on + strandat 123.440 kb on - strandat 123.440 kb on - strandat 123.555 kb on - strand, within GFF766at 123.565 kb on + strand, within GFF766at 123.622 kb on + strand, within GFF766at 123.636 kb on + strand, within GFF766at 123.774 kb on - strand, within GFF766at 123.832 kb on + strand, within GFF766at 123.864 kb on + strand, within GFF766at 123.929 kb on + strand, within GFF766

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt new) 0.075 MOI
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120,590 - GFF763 0.37 +0.5
120,689 + GFF763 0.45 +0.4
120,704 + GFF763 0.47 -0.2
120,821 + GFF763 0.57 -0.2
120,838 + GFF763 0.58 -0.8
120,839 - GFF763 0.59 -0.3
121,093 + GFF763 0.81 -0.4
122,029 + GFF764 0.33 +0.8
122,123 + GFF764 0.40 +0.5
122,129 + GFF764 0.40 -1.2
122,159 + GFF764 0.42 -0.0
122,172 - GFF764 0.43 +0.3
122,372 - GFF764 0.58 +0.4
122,400 + GFF764 0.60 +0.8
122,406 + GFF764 0.61 -0.0
122,407 - GFF764 0.61 +0.4
122,439 + GFF764 0.63 +0.4
122,439 + GFF764 0.63 +0.5
122,439 + GFF764 0.63 -1.1
122,439 + GFF764 0.63 +1.1
123,329 - +0.7
123,415 + +0.5
123,416 - -0.1
123,419 + -0.2
123,419 + -1.3
123,439 + +0.5
123,440 - -0.1
123,440 - +0.1
123,555 - GFF766 0.18 -0.3
123,565 + GFF766 0.18 +0.1
123,622 + GFF766 0.22 +0.1
123,636 + GFF766 0.23 +0.2
123,774 - GFF766 0.32 +0.7
123,832 + GFF766 0.36 -0.1
123,864 + GFF766 0.38 +0.0
123,929 + GFF766 0.43 -0.5

Or see this region's nucleotide sequence