Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF737

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt new) 0.075 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF735 and GFF736 are separated by 10 nucleotidesGFF736 and GFF737 are separated by 32 nucleotidesGFF737 and GFF738 are separated by 63 nucleotides GFF735 - Electron transfer flavoprotein, beta subunit, at 93,783 to 94,532 GFF735 GFF736 - Electron transfer flavoprotein, alpha subunit, at 94,543 to 95,490 GFF736 GFF737 - FIG01047477: hypothetical protein, at 95,523 to 95,720 GFF737 GFF738 - Probable acyl-CoA dehydrogenase (EC 1.3.99.3), at 95,784 to 96,947 GFF738 Position (kb) 95 96Strain fitness (log2 ratio) -1 0 1at 94.734 kb on - strand, within GFF736at 94.989 kb on - strand, within GFF736at 95.129 kb on + strand, within GFF736at 95.993 kb on + strand, within GFF738at 96.014 kb on + strand, within GFF738at 96.066 kb on - strand, within GFF738at 96.122 kb on + strand, within GFF738at 96.492 kb on + strand, within GFF738at 96.522 kb on - strand, within GFF738at 96.645 kb on - strand, within GFF738

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt new) 0.075 MOI
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94,734 - GFF736 0.20 +0.6
94,989 - GFF736 0.47 -0.1
95,129 + GFF736 0.62 -0.1
95,993 + GFF738 0.18 -0.6
96,014 + GFF738 0.20 +0.7
96,066 - GFF738 0.24 +0.0
96,122 + GFF738 0.29 -0.2
96,492 + GFF738 0.61 +0.2
96,522 - GFF738 0.63 +0.0
96,645 - GFF738 0.74 -0.8

Or see this region's nucleotide sequence