Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4702

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt new) 0.075 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4701 and GFF4702 are separated by 31 nucleotidesGFF4702 and GFF4703 overlap by 4 nucleotides GFF4701 - Glucitol operon repressor, at 11,417 to 12,190 GFF4701 GFF4702 - Arabinose 5-phosphate isomerase (EC 5.3.1.13), at 12,222 to 13,148 GFF4702 GFF4703 - Anaerobic nitric oxide reductase transcription regulator NorR, at 13,145 to 14,665 GFF4703 Position (kb) 12 13 14Strain fitness (log2 ratio) -1 0 1 2 3at 11.323 kb on + strandat 11.323 kb on + strandat 11.323 kb on + strandat 11.323 kb on + strandat 11.380 kb on - strandat 11.393 kb on - strandat 11.396 kb on + strandat 11.498 kb on + strand, within GFF4701at 11.574 kb on - strand, within GFF4701at 11.678 kb on + strand, within GFF4701at 11.678 kb on + strand, within GFF4701at 11.679 kb on - strand, within GFF4701at 11.727 kb on + strand, within GFF4701at 11.789 kb on - strand, within GFF4701at 12.196 kb on + strandat 12.199 kb on + strandat 12.220 kb on + strandat 12.468 kb on - strand, within GFF4702at 12.468 kb on - strand, within GFF4702at 13.005 kb on - strand, within GFF4702at 13.064 kb on + strandat 13.142 kb on + strandat 13.228 kb on + strandat 13.419 kb on - strand, within GFF4703at 13.473 kb on + strand, within GFF4703at 13.474 kb on - strand, within GFF4703at 13.775 kb on - strand, within GFF4703at 13.846 kb on + strand, within GFF4703at 13.847 kb on - strand, within GFF4703at 13.886 kb on + strand, within GFF4703at 13.886 kb on + strand, within GFF4703at 13.886 kb on + strand, within GFF4703

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt new) 0.075 MOI
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11,323 + +1.4
11,323 + +1.8
11,323 + +1.1
11,323 + +1.3
11,380 - +2.9
11,393 - +1.6
11,396 + +1.1
11,498 + GFF4701 0.10 +1.9
11,574 - GFF4701 0.20 +1.7
11,678 + GFF4701 0.34 +0.6
11,678 + GFF4701 0.34 +1.3
11,679 - GFF4701 0.34 +1.2
11,727 + GFF4701 0.40 -0.1
11,789 - GFF4701 0.48 +2.8
12,196 + +0.6
12,199 + +0.1
12,220 + +1.0
12,468 - GFF4702 0.27 +0.8
12,468 - GFF4702 0.27 +0.6
13,005 - GFF4702 0.84 +2.3
13,064 + +0.0
13,142 + -0.2
13,228 + +0.7
13,419 - GFF4703 0.18 +0.2
13,473 + GFF4703 0.22 -0.3
13,474 - GFF4703 0.22 +0.2
13,775 - GFF4703 0.41 +1.0
13,846 + GFF4703 0.46 +0.5
13,847 - GFF4703 0.46 -0.4
13,886 + GFF4703 0.49 +1.0
13,886 + GFF4703 0.49 +0.7
13,886 + GFF4703 0.49 +0.1

Or see this region's nucleotide sequence