Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3121

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt new) 0.075 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3120 and GFF3121 are separated by 139 nucleotidesGFF3121 and GFF3122 are separated by 63 nucleotidesGFF3122 and GFF3123 overlap by 11 nucleotides GFF3120 - Cystathionine beta-lyase (EC 4.4.1.8), at 126,130 to 127,317 GFF3120 GFF3121 - DedA family inner membrane protein YghB, at 127,457 to 128,116 GFF3121 GFF3122 - Transcriptional regulator, AraC family, at 128,180 to 129,079 GFF3122 GFF3123 - hypothetical protein, at 129,069 to 129,185 GFF3123 Position (kb) 127 128 129Strain fitness (log2 ratio) -1 0 1at 126.460 kb on + strand, within GFF3120at 126.558 kb on + strand, within GFF3120at 126.581 kb on + strand, within GFF3120at 126.687 kb on + strand, within GFF3120at 126.735 kb on + strand, within GFF3120at 126.735 kb on + strand, within GFF3120at 126.877 kb on + strand, within GFF3120at 126.878 kb on - strand, within GFF3120at 126.878 kb on - strand, within GFF3120at 126.878 kb on - strand, within GFF3120at 126.879 kb on + strand, within GFF3120at 126.880 kb on - strand, within GFF3120at 126.880 kb on - strand, within GFF3120at 126.880 kb on - strand, within GFF3120at 127.009 kb on - strand, within GFF3120at 127.108 kb on + strand, within GFF3120at 127.142 kb on - strand, within GFF3120at 127.176 kb on + strand, within GFF3120at 127.316 kb on - strandat 127.336 kb on + strandat 127.337 kb on - strandat 127.337 kb on - strandat 127.338 kb on + strandat 127.338 kb on + strandat 127.338 kb on + strandat 127.338 kb on + strandat 127.339 kb on - strandat 127.339 kb on - strandat 127.339 kb on - strandat 127.339 kb on - strandat 127.339 kb on - strandat 127.339 kb on - strandat 127.412 kb on - strandat 127.417 kb on - strandat 127.432 kb on + strandat 127.475 kb on - strandat 127.542 kb on - strand, within GFF3121at 127.599 kb on + strand, within GFF3121at 127.600 kb on - strand, within GFF3121at 127.715 kb on + strand, within GFF3121at 127.739 kb on - strand, within GFF3121at 127.741 kb on + strand, within GFF3121at 127.742 kb on - strand, within GFF3121at 127.785 kb on - strand, within GFF3121at 127.827 kb on + strand, within GFF3121at 127.827 kb on + strand, within GFF3121at 128.019 kb on + strand, within GFF3121at 128.020 kb on - strand, within GFF3121at 128.052 kb on + strandat 128.108 kb on - strandat 128.120 kb on - strandat 128.120 kb on - strandat 128.182 kb on - strandat 128.182 kb on - strandat 128.246 kb on - strandat 128.246 kb on - strandat 128.470 kb on - strand, within GFF3122at 128.488 kb on + strand, within GFF3122at 128.850 kb on - strand, within GFF3122at 128.976 kb on + strand, within GFF3122at 129.012 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt new) 0.075 MOI
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126,460 + GFF3120 0.28 -0.5
126,558 + GFF3120 0.36 -0.1
126,581 + GFF3120 0.38 +0.3
126,687 + GFF3120 0.47 +0.4
126,735 + GFF3120 0.51 -0.1
126,735 + GFF3120 0.51 +0.0
126,877 + GFF3120 0.63 +0.5
126,878 - GFF3120 0.63 +0.2
126,878 - GFF3120 0.63 +0.1
126,878 - GFF3120 0.63 +0.1
126,879 + GFF3120 0.63 -0.1
126,880 - GFF3120 0.63 +0.3
126,880 - GFF3120 0.63 -0.2
126,880 - GFF3120 0.63 +0.2
127,009 - GFF3120 0.74 -0.3
127,108 + GFF3120 0.82 -0.2
127,142 - GFF3120 0.85 +0.2
127,176 + GFF3120 0.88 +0.4
127,316 - +0.2
127,336 + +0.4
127,337 - +0.1
127,337 - +0.4
127,338 + +0.2
127,338 + +0.3
127,338 + +0.2
127,338 + +0.6
127,339 - -1.5
127,339 - -0.0
127,339 - +0.4
127,339 - +0.6
127,339 - -0.4
127,339 - +0.1
127,412 - -0.4
127,417 - -0.5
127,432 + -0.7
127,475 - +0.2
127,542 - GFF3121 0.13 +1.0
127,599 + GFF3121 0.22 -0.2
127,600 - GFF3121 0.22 +0.2
127,715 + GFF3121 0.39 +0.8
127,739 - GFF3121 0.43 -0.0
127,741 + GFF3121 0.43 -0.2
127,742 - GFF3121 0.43 -0.5
127,785 - GFF3121 0.50 +0.4
127,827 + GFF3121 0.56 -0.3
127,827 + GFF3121 0.56 -1.2
128,019 + GFF3121 0.85 -0.6
128,020 - GFF3121 0.85 -0.1
128,052 + -0.0
128,108 - -0.5
128,120 - -0.0
128,120 - -0.4
128,182 - -0.0
128,182 - +0.2
128,246 - -1.1
128,246 - +0.7
128,470 - GFF3122 0.32 -0.1
128,488 + GFF3122 0.34 -0.8
128,850 - GFF3122 0.74 -0.4
128,976 + GFF3122 0.88 -0.3
129,012 - -0.2

Or see this region's nucleotide sequence