Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1212

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt new) 0.075 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1210 and GFF1211 are separated by 14 nucleotidesGFF1211 and GFF1212 overlap by 8 nucleotidesGFF1212 and GFF1213 are separated by 83 nucleotidesGFF1213 and GFF1214 are separated by 27 nucleotides GFF1210 - Kappa-fimbriae probable subunit, at 49,899 to 50,456 GFF1210 GFF1211 - Kappa-fimbriae chaperone protein, at 50,471 to 51,163 GFF1211 GFF1212 - Kappa-fimbriae usher protein, at 51,156 to 53,564 GFF1212 GFF1213 - hypothetical protein, at 53,648 to 53,764 GFF1213 GFF1214 - Kappa-fimbriae major subunit, at 53,792 to 54,310 GFF1214 Position (kb) 51 52 53 54Strain fitness (log2 ratio) -2 -1 0 1at 50.192 kb on + strand, within GFF1210at 50.193 kb on - strand, within GFF1210at 50.269 kb on + strand, within GFF1210at 50.270 kb on - strand, within GFF1210at 50.279 kb on + strand, within GFF1210at 50.280 kb on - strand, within GFF1210at 50.283 kb on - strand, within GFF1210at 50.349 kb on - strand, within GFF1210at 50.485 kb on - strandat 50.485 kb on - strandat 50.930 kb on - strand, within GFF1211at 50.955 kb on + strand, within GFF1211at 50.955 kb on + strand, within GFF1211at 50.955 kb on + strand, within GFF1211at 50.956 kb on - strand, within GFF1211at 50.956 kb on - strand, within GFF1211at 50.956 kb on - strand, within GFF1211at 50.956 kb on - strand, within GFF1211at 50.956 kb on - strand, within GFF1211at 51.064 kb on - strand, within GFF1211at 51.157 kb on + strandat 51.157 kb on + strandat 51.158 kb on - strandat 51.158 kb on - strandat 51.166 kb on + strandat 51.192 kb on - strandat 51.201 kb on - strandat 51.201 kb on - strandat 51.272 kb on + strandat 51.273 kb on - strandat 51.273 kb on - strandat 51.385 kb on + strandat 51.521 kb on - strand, within GFF1212at 51.545 kb on - strand, within GFF1212at 51.545 kb on - strand, within GFF1212at 51.545 kb on - strand, within GFF1212at 51.704 kb on + strand, within GFF1212at 51.901 kb on + strand, within GFF1212at 51.902 kb on - strand, within GFF1212at 51.935 kb on + strand, within GFF1212at 51.955 kb on + strand, within GFF1212at 51.974 kb on - strand, within GFF1212at 51.983 kb on + strand, within GFF1212at 51.984 kb on - strand, within GFF1212at 51.988 kb on + strand, within GFF1212at 51.988 kb on + strand, within GFF1212at 51.988 kb on + strand, within GFF1212at 51.989 kb on - strand, within GFF1212at 51.989 kb on - strand, within GFF1212at 52.032 kb on - strand, within GFF1212at 52.078 kb on + strand, within GFF1212at 52.079 kb on - strand, within GFF1212at 52.079 kb on - strand, within GFF1212at 52.109 kb on + strand, within GFF1212at 52.162 kb on + strand, within GFF1212at 52.182 kb on - strand, within GFF1212at 52.187 kb on - strand, within GFF1212at 52.208 kb on - strand, within GFF1212at 52.273 kb on + strand, within GFF1212at 52.273 kb on + strand, within GFF1212at 52.273 kb on + strand, within GFF1212at 52.402 kb on + strand, within GFF1212at 52.403 kb on - strand, within GFF1212at 52.514 kb on + strand, within GFF1212at 52.514 kb on + strand, within GFF1212at 52.515 kb on - strand, within GFF1212at 52.515 kb on - strand, within GFF1212at 52.515 kb on - strand, within GFF1212at 52.516 kb on + strand, within GFF1212at 52.516 kb on + strand, within GFF1212at 52.516 kb on + strand, within GFF1212at 52.517 kb on - strand, within GFF1212at 52.520 kb on + strand, within GFF1212at 52.549 kb on + strand, within GFF1212at 52.550 kb on - strand, within GFF1212at 52.550 kb on - strand, within GFF1212at 52.550 kb on - strand, within GFF1212at 52.550 kb on - strand, within GFF1212at 52.685 kb on - strand, within GFF1212at 52.838 kb on - strand, within GFF1212at 52.985 kb on + strand, within GFF1212at 52.985 kb on + strand, within GFF1212at 52.986 kb on - strand, within GFF1212at 53.036 kb on - strand, within GFF1212at 53.081 kb on - strand, within GFF1212at 53.107 kb on + strand, within GFF1212at 53.108 kb on - strand, within GFF1212at 53.203 kb on + strand, within GFF1212at 53.204 kb on - strand, within GFF1212at 53.224 kb on + strand, within GFF1212at 53.224 kb on + strand, within GFF1212at 53.224 kb on + strand, within GFF1212at 53.225 kb on - strand, within GFF1212at 53.225 kb on - strand, within GFF1212at 53.258 kb on - strand, within GFF1212at 53.395 kb on + strandat 53.395 kb on + strandat 53.395 kb on + strandat 53.396 kb on - strandat 53.396 kb on - strandat 53.396 kb on - strandat 53.396 kb on - strandat 53.430 kb on + strandat 53.969 kb on + strand, within GFF1214at 53.983 kb on + strand, within GFF1214at 53.983 kb on + strand, within GFF1214at 54.284 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt new) 0.075 MOI
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50,192 + GFF1210 0.53 +0.0
50,193 - GFF1210 0.53 +0.1
50,269 + GFF1210 0.66 -0.2
50,270 - GFF1210 0.66 +0.6
50,279 + GFF1210 0.68 -0.3
50,280 - GFF1210 0.68 -1.0
50,283 - GFF1210 0.69 +0.5
50,349 - GFF1210 0.81 -0.2
50,485 - -0.1
50,485 - -0.7
50,930 - GFF1211 0.66 +0.7
50,955 + GFF1211 0.70 +0.3
50,955 + GFF1211 0.70 +0.2
50,955 + GFF1211 0.70 +0.2
50,956 - GFF1211 0.70 -0.4
50,956 - GFF1211 0.70 -0.5
50,956 - GFF1211 0.70 -0.3
50,956 - GFF1211 0.70 +0.3
50,956 - GFF1211 0.70 +0.1
51,064 - GFF1211 0.86 -0.6
51,157 + +0.2
51,157 + -0.5
51,158 - +0.6
51,158 - -0.6
51,166 + +0.7
51,192 - +0.5
51,201 - -0.0
51,201 - +0.2
51,272 + -0.2
51,273 - +1.7
51,273 - -0.9
51,385 + -0.1
51,521 - GFF1212 0.15 +0.6
51,545 - GFF1212 0.16 -0.8
51,545 - GFF1212 0.16 +0.0
51,545 - GFF1212 0.16 +0.2
51,704 + GFF1212 0.23 -0.1
51,901 + GFF1212 0.31 +0.1
51,902 - GFF1212 0.31 -0.5
51,935 + GFF1212 0.32 +0.3
51,955 + GFF1212 0.33 -0.5
51,974 - GFF1212 0.34 -0.9
51,983 + GFF1212 0.34 +0.4
51,984 - GFF1212 0.34 +0.1
51,988 + GFF1212 0.35 -0.1
51,988 + GFF1212 0.35 -0.1
51,988 + GFF1212 0.35 -0.4
51,989 - GFF1212 0.35 -0.4
51,989 - GFF1212 0.35 -0.8
52,032 - GFF1212 0.36 -2.6
52,078 + GFF1212 0.38 -2.0
52,079 - GFF1212 0.38 -0.3
52,079 - GFF1212 0.38 -0.8
52,109 + GFF1212 0.40 +0.5
52,162 + GFF1212 0.42 +0.2
52,182 - GFF1212 0.43 -0.3
52,187 - GFF1212 0.43 -0.6
52,208 - GFF1212 0.44 +0.6
52,273 + GFF1212 0.46 +0.4
52,273 + GFF1212 0.46 +0.1
52,273 + GFF1212 0.46 +0.1
52,402 + GFF1212 0.52 -0.9
52,403 - GFF1212 0.52 -0.6
52,514 + GFF1212 0.56 +0.0
52,514 + GFF1212 0.56 -0.1
52,515 - GFF1212 0.56 -2.0
52,515 - GFF1212 0.56 +0.4
52,515 - GFF1212 0.56 -0.4
52,516 + GFF1212 0.56 +0.2
52,516 + GFF1212 0.56 -1.1
52,516 + GFF1212 0.56 +0.9
52,517 - GFF1212 0.56 -0.5
52,520 + GFF1212 0.57 -0.1
52,549 + GFF1212 0.58 +0.9
52,550 - GFF1212 0.58 -0.1
52,550 - GFF1212 0.58 -0.0
52,550 - GFF1212 0.58 -1.5
52,550 - GFF1212 0.58 +0.1
52,685 - GFF1212 0.63 -0.6
52,838 - GFF1212 0.70 -0.1
52,985 + GFF1212 0.76 -0.4
52,985 + GFF1212 0.76 +0.7
52,986 - GFF1212 0.76 +0.9
53,036 - GFF1212 0.78 -0.4
53,081 - GFF1212 0.80 -0.2
53,107 + GFF1212 0.81 -0.1
53,108 - GFF1212 0.81 +0.4
53,203 + GFF1212 0.85 -0.7
53,204 - GFF1212 0.85 -1.2
53,224 + GFF1212 0.86 -0.1
53,224 + GFF1212 0.86 -0.6
53,224 + GFF1212 0.86 +0.2
53,225 - GFF1212 0.86 +1.0
53,225 - GFF1212 0.86 -1.1
53,258 - GFF1212 0.87 -0.2
53,395 + +0.2
53,395 + -0.5
53,395 + +0.3
53,396 - +0.3
53,396 - +0.1
53,396 - +0.1
53,396 - -0.5
53,430 + -0.1
53,969 + GFF1214 0.34 +0.1
53,983 + GFF1214 0.37 +0.5
53,983 + GFF1214 0.37 -0.4
54,284 - -0.1

Or see this region's nucleotide sequence