Strain Fitness in Agrobacterium fabrum C58 around Atu4862

Experiment: R2A with silver chloride 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with silver chloride 5 mM
2,046,487	-				-0.4
2,046,601	+				+0.5
2,046,646	+				-0.6
2,046,654	+				-0.7
2,046,656	+				+0.0
2,046,721	-				-0.9
2,046,763	+				+0.6
2,046,806	+		Atu4861	0.12	+0.0
2,046,809	+		Atu4861	0.12	-1.6
2,046,809	+		Atu4861	0.12	-0.6
2,046,809	+		Atu4861	0.12	-0.7
2,046,809	+		Atu4861	0.12	-0.6
2,046,817	-		Atu4861	0.13	-0.2
2,046,817	-		Atu4861	0.13	+1.5
2,046,873	+		Atu4861	0.21	-0.4
2,046,873	+		Atu4861	0.21	-0.4
2,046,881	-		Atu4861	0.22	-1.6
2,046,890	+		Atu4861	0.23	-0.4
2,046,942	-		Atu4861	0.30	-0.6
2,047,042	+		Atu4861	0.43	-0.2
2,047,047	+		Atu4861	0.43	-0.5
2,047,050	-		Atu4861	0.44	-1.0
2,047,086	-		Atu4861	0.49	-0.4
2,047,246	-		Atu4861	0.70	-0.9
2,047,248	+		Atu4861	0.70	-0.2
2,047,290	+		Atu4861	0.75	+0.3
2,047,290	+		Atu4861	0.75	-0.5
2,047,298	-		Atu4861	0.77	+0.1
2,047,320	+		Atu4861	0.79	-1.2
2,047,508	+				-1.0
2,047,508	+				-0.8
2,047,508	+				-1.4
2,047,514	+				-0.6
2,047,684	+		Atu4862	0.14	-0.6
2,047,709	+		Atu4862	0.16	-0.4
2,047,711	-		Atu4862	0.16	-0.1
2,047,793	-		Atu4862	0.21	-0.3
2,047,802	+		Atu4862	0.22	+0.8
2,047,807	+		Atu4862	0.22	-0.9
2,047,953	+		Atu4862	0.32	-0.0
2,047,961	-		Atu4862	0.33	-0.7
2,048,032	-		Atu4862	0.37	+0.2
2,048,161	+		Atu4862	0.46	+0.0
2,048,189	-		Atu4862	0.48	+1.0
2,048,197	+		Atu4862	0.48	-1.3
2,048,205	+		Atu4862	0.49	-0.1
2,048,360	-		Atu4862	0.59	-0.8
2,048,378	-		Atu4862	0.61	-0.5
2,048,427	+		Atu4862	0.64	-0.0
2,048,427	+		Atu4862	0.64	-0.4
2,048,427	+		Atu4862	0.64	-0.7
2,048,427	+		Atu4862	0.64	-0.8
2,048,427	+		Atu4862	0.64	-0.1
2,048,430	-		Atu4862	0.64	-1.1
2,048,435	-		Atu4862	0.64	-0.4
2,048,435	-		Atu4862	0.64	-0.4
2,048,435	-		Atu4862	0.64	-0.3
2,048,435	-		Atu4862	0.64	-0.1
2,048,435	-		Atu4862	0.64	-1.2
2,048,463	+		Atu4862	0.66	-0.5
2,048,482	+		Atu4862	0.67	-0.9
2,048,487	+		Atu4862	0.68	-0.7
2,048,495	-		Atu4862	0.68	-0.9
2,048,495	-		Atu4862	0.68	-0.2
2,048,495	-		Atu4862	0.68	-0.4
2,048,500	+		Atu4862	0.69	-0.9
2,048,545	-		Atu4862	0.72	-0.5
2,048,554	+		Atu4862	0.72	-0.8
2,048,596	+		Atu4862	0.75	-0.8
2,048,604	-		Atu4862	0.76	-0.3
2,048,714	-		Atu4862	0.83	+1.0
2,048,811	-		Atu4862	0.89	-1.7
2,048,920	+				-0.2
2,048,928	-				-0.8
2,048,970	+				-1.1
2,048,970	+				-1.6
2,048,978	-				-0.7
2,048,979	+				-0.1
2,049,017	-				-0.8
2,049,080	-				-0.0
2,049,090	-				-0.1
2,049,092	+				-0.2
2,049,128	+				-0.4
2,049,147	-				-0.9
2,049,179	+				-0.8
2,049,179	+				-0.6
2,049,182	-				-1.0
2,049,195	-				-0.7
2,049,399	-				-0.5
2,049,452	+		Atu4864	0.19	+0.9
2,049,460	-		Atu4864	0.21	-0.8
2,049,470	-		Atu4864	0.23	-1.0
2,049,507	+		Atu4864	0.31	-1.2
2,049,571	-		Atu4864	0.45	+0.2
2,049,590	+		Atu4864	0.49	-0.4
2,049,603	+		Atu4864	0.52	+0.0
2,049,609	-		Atu4864	0.53	+1.0
2,049,699	+		Atu4864	0.73	+0.3
2,049,726	+		Atu4864	0.79	-0.5
2,049,731	+		Atu4864	0.80	-1.1
2,049,731	+		Atu4864	0.80	+1.0
2,049,783	-				-2.7
2,049,815	-				+2.7
2,049,903	+				-0.6
2,049,910	+				-0.6
2,049,911	-				-0.5
2,049,911	-				-0.3
2,049,913	+				-1.4
2,049,950	+				-1.1
2,049,950	+				-2.1
2,049,950	+				-0.7
2,049,950	+				-1.5
2,049,950	+				+0.3
2,049,950	+				+0.1
2,049,950	+				-1.4
2,049,958	-				-0.6
2,049,958	-				-0.4