Strain Fitness in Agrobacterium fabrum C58 around Atu4858

Experiment: R2A with silver chloride 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with silver chloride 5 mM
2,040,695	+		Atu4856	0.48	+0.4
2,040,718	+		Atu4856	0.51	+1.0
2,040,746	+		Atu4856	0.54	+0.6
2,040,746	+		Atu4856	0.54	-0.6
2,040,746	+		Atu4856	0.54	+0.2
2,040,810	-		Atu4856	0.61	+0.4
2,040,827	+		Atu4856	0.63	+0.4
2,040,846	+		Atu4856	0.65	-0.9
2,040,854	-		Atu4856	0.66	+0.1
2,040,888	-		Atu4856	0.69	-0.6
2,040,957	-		Atu4856	0.77	-0.2
2,040,984	+		Atu4856	0.80	-1.0
2,041,009	+		Atu4856	0.82	-2.6
2,041,009	+		Atu4856	0.82	+0.2
2,041,017	-		Atu4856	0.83	+1.4
2,041,017	-		Atu4856	0.83	+0.3
2,041,024	+		Atu4856	0.84	-1.6
2,041,053	+		Atu4856	0.87	-0.3
2,041,061	-		Atu4856	0.88	-1.8
2,041,061	-		Atu4856	0.88	-0.2
2,041,063	+		Atu4856	0.88	-0.9
2,041,071	-		Atu4856	0.89	-1.1
2,041,086	+				-0.0
2,041,138	-				-0.5
2,041,225	+				-1.0
2,041,359	-				-0.7
2,041,395	-		Atu4857	0.19	-1.0
2,041,397	-		Atu4857	0.19	-0.5
2,041,420	+		Atu4857	0.26	-0.6
2,041,421	+		Atu4857	0.26	+0.4
2,041,430	+		Atu4857	0.29	-1.1
2,041,449	+		Atu4857	0.35	-0.8
2,041,475	-		Atu4857	0.43	+0.5
2,041,496	+		Atu4857	0.49	+0.2
2,041,612	+		Atu4857	0.83	-0.5
2,041,612	+		Atu4857	0.83	-0.7
2,041,620	-		Atu4857	0.86	-0.3
2,041,675	+				-1.0
2,041,739	+				-0.7
2,041,878	-		Atu4858	0.13	-0.7
2,041,880	+		Atu4858	0.13	+0.6
2,041,885	+		Atu4858	0.13	-0.5
2,041,898	+		Atu4858	0.14	+1.4
2,041,899	+		Atu4858	0.14	-0.8
2,041,949	-		Atu4858	0.17	-0.1
2,041,985	+		Atu4858	0.19	-0.0
2,042,032	+		Atu4858	0.22	+0.2
2,042,077	+		Atu4858	0.25	-0.8
2,042,084	+		Atu4858	0.25	-2.5
2,042,085	-		Atu4858	0.25	-1.0
2,042,102	-		Atu4858	0.26	-0.6
2,042,178	-		Atu4858	0.31	-0.5
2,042,313	+		Atu4858	0.39	-0.4
2,042,321	-		Atu4858	0.39	-0.5
2,042,321	-		Atu4858	0.39	-0.7
2,042,321	-		Atu4858	0.39	-0.4
2,042,338	-		Atu4858	0.40	-0.9
2,042,345	-		Atu4858	0.41	-0.6
2,042,436	-		Atu4858	0.46	+0.1
2,042,526	+		Atu4858	0.52	-1.0
2,042,526	+		Atu4858	0.52	-0.8
2,042,528	-		Atu4858	0.52	-1.4
2,042,534	-		Atu4858	0.52	-1.7
2,042,536	+		Atu4858	0.52	-0.4
2,042,548	+		Atu4858	0.53	-0.3
2,042,548	+		Atu4858	0.53	-1.2
2,042,548	+		Atu4858	0.53	-1.1
2,042,548	+		Atu4858	0.53	+1.5
2,042,548	+		Atu4858	0.53	-1.8
2,042,556	-		Atu4858	0.54	-0.3
2,042,556	-		Atu4858	0.54	-1.0
2,042,556	-		Atu4858	0.54	+0.0
2,042,633	+		Atu4858	0.58	-1.5
2,042,654	+		Atu4858	0.59	+0.2
2,042,654	+		Atu4858	0.59	-0.8
2,042,654	+		Atu4858	0.59	-0.3
2,042,707	-		Atu4858	0.63	-0.1
2,042,770	+		Atu4858	0.66	-0.7
2,042,799	+		Atu4858	0.68	-3.3
2,042,817	+		Atu4858	0.69	+0.1
2,042,842	+		Atu4858	0.71	-0.9
2,042,862	-		Atu4858	0.72	-0.0
2,042,887	+		Atu4858	0.73	-0.9
2,042,951	+		Atu4858	0.77	+1.4
2,042,956	+		Atu4858	0.78	-1.0
2,042,979	+		Atu4858	0.79	-1.5
2,042,987	-		Atu4858	0.79	-0.5
2,042,987	-		Atu4858	0.79	-0.5
2,043,003	-		Atu4858	0.80	-0.8
2,043,011	+		Atu4858	0.81	-0.4
2,043,107	-		Atu4858	0.87	-0.6
2,043,111	-		Atu4858	0.87	-0.7
2,043,136	+		Atu4858	0.88	-1.2
2,043,198	+				+0.8
2,043,241	+				-0.9
2,043,241	+				-0.2
2,043,305	+				-0.8
2,043,384	+				-1.4
2,043,385	+				+0.1
2,043,461	+				-0.0
2,043,461	+				-0.1
2,043,469	-				-0.5
2,043,469	-				-0.3
2,043,519	+				-1.2
2,043,608	+				-0.5
2,043,645	-				+1.2
2,043,651	+				-0.4
2,043,666	+				-0.7
2,043,673	+				-0.1
2,043,679	+				+0.4
2,043,681	-				-0.4
2,043,687	-				-0.8
2,043,687	-				-0.5
2,043,800	-		Atu4859	0.12	-0.6
2,043,836	-		Atu4859	0.15	-0.7
2,043,868	+		Atu4859	0.18	-0.4
2,043,870	-		Atu4859	0.18	+0.7
2,043,887	-		Atu4859	0.20	+1.9
2,043,908	-		Atu4859	0.22	-0.5
2,044,116	-		Atu4859	0.41	-0.9
2,044,188	+		Atu4859	0.48	-0.0
2,044,196	-		Atu4859	0.49	+1.4
2,044,196	-		Atu4859	0.49	+0.5
2,044,198	+		Atu4859	0.49	-0.7
2,044,206	-		Atu4859	0.49	-0.6
2,044,207	-		Atu4859	0.50	-0.6
2,044,278	+		Atu4859	0.56	+0.1
2,044,278	+		Atu4859	0.56	+0.5
2,044,278	+		Atu4859	0.56	-0.2
2,044,286	-		Atu4859	0.57	+0.0