Strain Fitness in Agrobacterium fabrum C58 around Atu4834

Experiment: R2A with silver chloride 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with silver chloride 5 mM
2,013,857	-		Atu4833	0.61	+0.8
2,013,962	-		Atu4833	0.65	+0.2
2,013,976	-		Atu4833	0.66	-0.6
2,013,978	+		Atu4833	0.66	+0.0
2,013,978	+		Atu4833	0.66	-0.2
2,013,986	-		Atu4833	0.66	+0.1
2,013,998	-		Atu4833	0.66	+0.2
2,014,015	+		Atu4833	0.67	-0.6
2,014,092	+		Atu4833	0.70	+0.5
2,014,114	-		Atu4833	0.71	-1.0
2,014,118	+		Atu4833	0.71	-1.2
2,014,153	-		Atu4833	0.73	-0.7
2,014,200	-		Atu4833	0.75	-0.2
2,014,207	+		Atu4833	0.75	-0.5
2,014,207	+		Atu4833	0.75	-2.2
2,014,207	+		Atu4833	0.75	-0.4
2,014,207	+		Atu4833	0.75	-0.2
2,014,207	+		Atu4833	0.75	-1.0
2,014,207	+		Atu4833	0.75	-0.1
2,014,207	+		Atu4833	0.75	-1.0
2,014,207	+		Atu4833	0.75	+0.2
2,014,207	+		Atu4833	0.75	-0.2
2,014,207	+		Atu4833	0.75	-0.1
2,014,215	-		Atu4833	0.75	-0.5
2,014,215	-		Atu4833	0.75	-0.1
2,014,215	-		Atu4833	0.75	+0.3
2,014,215	-		Atu4833	0.75	-0.9
2,014,215	-		Atu4833	0.75	-0.4
2,014,215	-		Atu4833	0.75	+0.4
2,014,220	-		Atu4833	0.76	-0.5
2,014,225	-		Atu4833	0.76	-0.5
2,014,271	+		Atu4833	0.78	-0.1
2,014,296	+		Atu4833	0.79	-1.4
2,014,344	+		Atu4833	0.81	-2.4
2,014,344	+		Atu4833	0.81	-0.9
2,014,344	+		Atu4833	0.81	-0.0
2,014,344	+		Atu4833	0.81	-0.2
2,014,352	-		Atu4833	0.81	+0.9
2,014,352	-		Atu4833	0.81	-0.8
2,014,352	-		Atu4833	0.81	+0.8
2,014,352	-		Atu4833	0.81	+0.8
2,014,388	-		Atu4833	0.83	-0.3
2,014,416	+		Atu4833	0.84	-0.4
2,014,419	-		Atu4833	0.84	-0.6
2,014,493	-		Atu4833	0.87	-0.7
2,014,558	+		Atu4833	0.90	+1.4
2,014,566	-				-0.3
2,014,582	+				-0.1
2,014,635	-				-0.8
2,014,747	-				-1.6
2,014,922	-				-0.3
2,014,976	-		Atu4834	0.13	-0.3
2,015,130	+		Atu4834	0.29	-0.3
2,015,180	-		Atu4834	0.34	-0.7
2,015,297	-		Atu4834	0.45	-0.5
2,015,306	+		Atu4834	0.46	+0.1
2,015,306	+		Atu4834	0.46	+0.2
2,015,306	+		Atu4834	0.46	-0.4
2,015,306	+		Atu4834	0.46	+0.4
2,015,306	+		Atu4834	0.46	-0.3
2,015,314	-		Atu4834	0.47	-0.4
2,015,314	-		Atu4834	0.47	+0.1
2,015,314	-		Atu4834	0.47	-0.1
2,015,359	+		Atu4834	0.52	-0.8
2,015,365	-		Atu4834	0.52	+0.3
2,015,367	-		Atu4834	0.52	-0.9
2,015,423	+		Atu4834	0.58	-0.1
2,015,444	+		Atu4834	0.60	+0.2
2,015,519	-		Atu4834	0.67	+0.3
2,015,566	+		Atu4834	0.72	-0.5
2,015,574	-		Atu4834	0.73	+0.4
2,015,580	+		Atu4834	0.74	-0.7
2,015,600	-		Atu4834	0.76	-0.6
2,015,600	-		Atu4834	0.76	+0.1
2,015,630	-		Atu4834	0.79	-0.3
2,015,648	+		Atu4834	0.80	-0.8
2,015,683	+		Atu4834	0.84	-1.2
2,015,691	-		Atu4834	0.85	-0.9
2,015,713	-		Atu4834	0.87	-0.4
2,015,879	+				-0.8
2,015,887	-				-0.3
2,015,979	-				-0.8
2,016,214	+		Atu4835	0.27	-0.8
2,016,223	+		Atu4835	0.27	-0.4
2,016,231	-		Atu4835	0.28	-0.6
2,016,312	-		Atu4835	0.34	-1.6
2,016,382	+		Atu4835	0.39	-0.0
2,016,451	-		Atu4835	0.44	+0.8
2,016,470	-		Atu4835	0.45	+0.1
2,016,560	-		Atu4835	0.52	+0.8
2,016,681	+		Atu4835	0.61	-1.7
2,016,681	+		Atu4835	0.61	-0.5
2,016,681	+		Atu4835	0.61	-0.2
2,016,681	+		Atu4835	0.61	-0.1
2,016,681	+		Atu4835	0.61	-0.5
2,016,689	-		Atu4835	0.61	-1.6
2,016,689	-		Atu4835	0.61	-0.3
2,016,689	-		Atu4835	0.61	+0.3
2,016,689	-		Atu4835	0.61	-2.9
2,016,689	-		Atu4835	0.61	-0.7
2,016,689	-		Atu4835	0.61	-1.0
2,016,689	-		Atu4835	0.61	-0.3
2,016,689	-		Atu4835	0.61	+1.9
2,016,758	-		Atu4835	0.66	+0.2
2,016,781	-		Atu4835	0.68	-0.5