Strain Fitness in Agrobacterium fabrum C58 around Atu4827

Experiment: R2A with silver chloride 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with silver chloride 5 mM
2,006,236	+				+1.0
2,006,244	-		Atu4826	0.11	-0.0
2,006,244	-		Atu4826	0.11	-0.4
2,006,277	-		Atu4826	0.14	-1.6
2,006,291	-		Atu4826	0.15	-0.5
2,006,386	-		Atu4826	0.25	+0.2
2,006,442	+		Atu4826	0.30	-1.0
2,006,444	-		Atu4826	0.30	-1.2
2,006,542	+		Atu4826	0.40	-0.7
2,006,542	+		Atu4826	0.40	-0.5
2,006,542	+		Atu4826	0.40	+0.4
2,006,545	-		Atu4826	0.40	-0.1
2,006,545	-		Atu4826	0.40	-1.0
2,006,545	-		Atu4826	0.40	-0.1
2,006,550	-		Atu4826	0.41	+0.1
2,006,550	-		Atu4826	0.41	-0.6
2,006,550	-		Atu4826	0.41	-1.1
2,006,550	-		Atu4826	0.41	-0.1
2,006,550	-		Atu4826	0.41	-0.7
2,006,550	-		Atu4826	0.41	+0.1
2,006,578	+		Atu4826	0.44	-1.4
2,006,578	+		Atu4826	0.44	-0.1
2,006,580	+		Atu4826	0.44	-0.5
2,006,586	-		Atu4826	0.45	+2.4
2,006,595	-		Atu4826	0.45	-0.2
2,006,630	+		Atu4826	0.49	-0.3
2,006,780	-		Atu4826	0.64	-0.4
2,006,808	+		Atu4826	0.66	-0.4
2,006,931	-		Atu4826	0.79	-0.8
2,006,961	-		Atu4826	0.82	-0.6
2,006,975	+		Atu4826	0.83	-0.8
2,006,983	-		Atu4826	0.84	+0.1
2,007,012	+		Atu4826	0.87	-1.8
2,007,057	+				-0.1
2,007,065	-				-0.8
2,007,093	+				-0.3
2,007,101	-				+0.3
2,007,101	-				-0.9
2,007,101	-				+0.9
2,007,266	+				-0.1
2,007,274	-				-0.6
2,007,293	-				-1.2
2,007,302	-				-0.1
2,007,461	+		Atu4827	0.13	-0.6
2,007,497	+		Atu4827	0.15	-0.7
2,007,505	-		Atu4827	0.16	-1.7
2,007,629	+		Atu4827	0.22	-1.0
2,007,666	+		Atu4827	0.24	-0.4
2,007,666	+		Atu4827	0.24	+0.6
2,007,705	-		Atu4827	0.26	-0.6
2,007,867	-		Atu4827	0.35	-0.7
2,007,872	+		Atu4827	0.35	+0.1
2,007,879	+		Atu4827	0.36	-0.1
2,007,940	-		Atu4827	0.39	-0.4
2,007,955	+		Atu4827	0.40	-0.9
2,007,975	+		Atu4827	0.41	-0.7
2,008,038	-		Atu4827	0.44	+1.0
2,008,072	+		Atu4827	0.46	-0.4
2,008,074	+		Atu4827	0.46	-0.9
2,008,112	-		Atu4827	0.48	-0.2
2,008,184	+		Atu4827	0.52	+0.5
2,008,199	-		Atu4827	0.53	-0.9
2,008,199	-		Atu4827	0.53	-0.5
2,008,280	+		Atu4827	0.57	-1.5
2,008,280	+		Atu4827	0.57	-0.0
2,008,286	-		Atu4827	0.57	-0.5
2,008,296	-		Atu4827	0.58	-0.1
2,008,303	-		Atu4827	0.58	-2.2
2,008,303	-		Atu4827	0.58	-0.5
2,008,315	-		Atu4827	0.59	+1.7
2,008,315	-		Atu4827	0.59	-0.7
2,008,328	+		Atu4827	0.59	-1.0
2,008,328	+		Atu4827	0.59	-0.0
2,008,330	-		Atu4827	0.60	-0.9
2,008,336	-		Atu4827	0.60	-0.5
2,008,363	+		Atu4827	0.61	-1.2
2,008,515	-		Atu4827	0.69	+0.1
2,008,623	-		Atu4827	0.75	-0.6
2,008,692	-		Atu4827	0.79	+0.5
2,008,761	+		Atu4827	0.82	+0.5
2,008,769	-		Atu4827	0.83	-0.0
2,008,780	-		Atu4827	0.83	-2.0
2,008,780	-		Atu4827	0.83	-1.4
2,008,874	+		Atu4827	0.88	-0.5
2,008,877	+		Atu4827	0.89	+0.2
2,008,926	-				-0.5
2,008,940	-				-1.8
2,009,030	+				-0.4
2,009,061	-				-1.0
2,009,109	+				+0.9
2,009,117	-				+1.0
2,009,149	-				-0.5
2,009,193	+				-1.0
2,009,202	+				-2.1
2,009,217	-				+0.2
2,009,328	-				-0.5
2,009,415	+				-1.3
2,009,452	+				-0.2
2,009,460	-				-0.7
2,009,460	-				+0.2
2,009,486	+				+0.2
2,009,514	-				-1.1
2,009,563	+				-0.3
2,009,571	-				-0.3
2,009,611	+				-0.7
2,009,618	-				-0.9
2,009,750	-				-1.4
2,009,803	+				-0.8
2,009,838	+				+2.2
2,009,911	+				-1.0
2,010,000	+				-0.5
2,010,001	+				-0.4
2,010,020	+				+1.0
2,010,034	+				-0.2