Strain Fitness in Agrobacterium fabrum C58 around Atu4824

Experiment: R2A with silver chloride 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with silver chloride 5 mM
2,003,445	+		Atu4823	0.19	-1.5
2,003,450	+		Atu4823	0.19	+0.3
2,003,458	-		Atu4823	0.20	-0.5
2,003,636	+		Atu4823	0.35	-0.7
2,003,636	+		Atu4823	0.35	+0.1
2,003,644	-		Atu4823	0.36	-0.7
2,003,644	-		Atu4823	0.36	-0.0
2,003,768	+		Atu4823	0.47	+1.2
2,003,771	-		Atu4823	0.47	-0.9
2,004,008	+		Atu4823	0.67	-0.9
2,004,013	+		Atu4823	0.68	-1.2
2,004,033	-		Atu4823	0.69	-0.5
2,004,108	+		Atu4823	0.76	-0.0
2,004,109	-		Atu4823	0.76	+0.2
2,004,116	-		Atu4823	0.76	-0.3
2,004,116	-		Atu4823	0.76	-0.5
2,004,121	-		Atu4823	0.77	-0.5
2,004,544	+		Atu4824	0.18	+0.3
2,004,579	-		Atu4824	0.22	-0.8
2,004,628	+		Atu4824	0.28	+0.0
2,004,677	+		Atu4824	0.33	+0.2
2,004,749	-		Atu4824	0.42	+0.3
2,004,829	-		Atu4824	0.51	+1.6
2,004,849	-		Atu4824	0.53	-0.2
2,004,898	-		Atu4824	0.59	+0.0
2,004,987	+		Atu4824	0.69	-0.4
2,005,040	+		Atu4824	0.75	-0.4
2,005,048	-		Atu4824	0.76	+0.1
2,005,048	-		Atu4824	0.76	-0.6
2,005,064	+		Atu4824	0.78	-0.5
2,005,069	+		Atu4824	0.79	-0.9
2,005,072	-		Atu4824	0.79	+0.6
2,005,281	-				+0.1
2,005,288	-				-0.2
2,005,330	+				+1.0
2,005,378	-		Atu4825	0.15	-0.6
2,005,534	+		Atu4825	0.34	-0.4
2,005,638	+		Atu4825	0.47	+0.8
2,005,679	-		Atu4825	0.52	-0.4
2,005,679	-		Atu4825	0.52	+0.0
2,005,679	-		Atu4825	0.52	-0.3
2,005,679	-		Atu4825	0.52	-0.1
2,005,695	-		Atu4825	0.54	-1.7
2,005,778	-		Atu4825	0.64	-0.8
2,005,816	+		Atu4825	0.69	-1.0
2,005,838	+		Atu4825	0.71	+0.5
2,005,846	-		Atu4825	0.72	-0.7
2,005,907	+		Atu4825	0.80	-1.5
2,005,938	-		Atu4825	0.84	-1.1
2,005,982	-		Atu4825	0.89	+0.0
2,006,117	-				-0.2
2,006,139	+				+0.1
2,006,147	-				-1.1
2,006,152	-				+0.1
2,006,152	-				-0.6
2,006,152	-				-1.8
2,006,204	+				+0.7
2,006,236	+				+1.0
2,006,244	-		Atu4826	0.11	-0.0
2,006,244	-		Atu4826	0.11	-0.4