Strain Fitness in Agrobacterium fabrum C58 around Atu4822

Experiment: R2A with silver chloride 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with silver chloride 5 mM
2,000,602	+		Atu4820	0.80	+1.2
2,000,625	+		Atu4820	0.83	+0.6
2,000,675	-		Atu4820	0.88	-0.1
2,000,680	-		Atu4820	0.89	-0.4
2,000,767	+				-1.1
2,000,831	+				-0.1
2,000,839	-				+0.2
2,000,957	+		Atu4821	0.23	+0.4
2,000,960	-		Atu4821	0.24	-0.3
2,000,960	-		Atu4821	0.24	-0.1
2,000,965	-		Atu4821	0.24	-0.2
2,001,038	+		Atu4821	0.34	+1.2
2,001,106	+		Atu4821	0.43	+0.2
2,001,150	+		Atu4821	0.48	+0.2
2,001,175	+		Atu4821	0.51	-0.8
2,001,272	+		Atu4821	0.64	-0.3
2,001,272	+		Atu4821	0.64	-0.4
2,001,280	-		Atu4821	0.65	+0.4
2,001,280	-		Atu4821	0.65	-0.6
2,001,416	-		Atu4821	0.82	+0.4
2,001,416	-		Atu4821	0.82	+0.4
2,001,416	-		Atu4821	0.82	-0.4
2,001,419	-		Atu4821	0.83	-0.3
2,001,465	+		Atu4821	0.89	+0.4
2,001,465	+		Atu4821	0.89	-0.6
2,001,465	+		Atu4821	0.89	-0.3
2,001,465	+		Atu4821	0.89	-0.2
2,001,478	-				-0.6
2,001,581	+				-1.3
2,001,590	-				-0.6
2,001,696	+				-0.4
2,001,698	+				-0.5
2,001,800	-		Atu4822	0.13	-0.7
2,001,834	+		Atu4822	0.15	-0.0
2,001,926	+		Atu4822	0.21	+0.8
2,001,926	+		Atu4822	0.21	-1.4
2,001,993	+		Atu4822	0.25	-0.2
2,001,996	-		Atu4822	0.25	-1.9
2,002,093	+		Atu4822	0.31	-0.0
2,002,224	-		Atu4822	0.39	+0.8
2,002,297	+		Atu4822	0.43	-0.6
2,002,318	+		Atu4822	0.45	+0.4
2,002,367	+		Atu4822	0.48	+0.0
2,002,400	-		Atu4822	0.50	-1.5
2,002,402	+		Atu4822	0.50	-0.8
2,002,509	-		Atu4822	0.56	-1.6
2,002,520	+		Atu4822	0.57	-1.1
2,002,637	-		Atu4822	0.64	+0.1
2,002,661	+		Atu4822	0.66	-0.3
2,002,701	-		Atu4822	0.68	-1.2
2,002,750	+		Atu4822	0.71	-0.5
2,002,764	+		Atu4822	0.72	-1.9
2,002,772	-		Atu4822	0.72	-1.1
2,002,846	+		Atu4822	0.77	-0.1
2,002,851	+		Atu4822	0.77	-0.1
2,002,912	-		Atu4822	0.81	-0.5
2,002,929	+		Atu4822	0.82	+0.1
2,003,087	-				-1.4
2,003,114	+				-0.6
2,003,176	-				+0.4
2,003,242	-				-0.7
2,003,445	+		Atu4823	0.19	-1.5
2,003,450	+		Atu4823	0.19	+0.3
2,003,458	-		Atu4823	0.20	-0.5
2,003,636	+		Atu4823	0.35	-0.7
2,003,636	+		Atu4823	0.35	+0.1
2,003,644	-		Atu4823	0.36	-0.7
2,003,644	-		Atu4823	0.36	-0.0
2,003,768	+		Atu4823	0.47	+1.2
2,003,771	-		Atu4823	0.47	-0.9
2,004,008	+		Atu4823	0.67	-0.9
2,004,013	+		Atu4823	0.68	-1.2
2,004,033	-		Atu4823	0.69	-0.5
2,004,108	+		Atu4823	0.76	-0.0
2,004,109	-		Atu4823	0.76	+0.2
2,004,116	-		Atu4823	0.76	-0.3
2,004,116	-		Atu4823	0.76	-0.5
2,004,121	-		Atu4823	0.77	-0.5