Strain Fitness in Agrobacterium fabrum C58 around Atu4210

Experiment: R2A with silver chloride 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with silver chloride 5 mM
1,332,284	+				+1.4
1,332,284	+				-0.1
1,332,298	-				+0.7
1,332,342	+				-0.5
1,332,350	-				-0.6
1,332,372	+				+1.4
1,332,380	-				-1.1
1,332,555	+		Atu4209	0.25	-0.3
1,332,558	-		Atu4209	0.25	+0.5
1,332,571	+		Atu4209	0.27	+0.3
1,332,617	+		Atu4209	0.32	+0.1
1,332,734	+		Atu4209	0.45	+0.1
1,332,735	-		Atu4209	0.45	-0.2
1,332,742	-		Atu4209	0.45	-0.2
1,332,770	+		Atu4209	0.48	-0.5
1,332,778	-		Atu4209	0.49	+0.1
1,332,815	-		Atu4209	0.53	+0.0
1,332,859	+		Atu4209	0.58	+0.1
1,332,886	-		Atu4209	0.61	-0.6
1,333,011	+		Atu4209	0.75	+0.2
1,333,027	-		Atu4209	0.77	-0.5
1,333,085	+		Atu4209	0.83	-0.3
1,333,127	+		Atu4209	0.88	-0.6
1,333,135	-		Atu4209	0.88	-0.0
1,333,145	+		Atu4209	0.90	-0.3
1,333,261	+				+0.3
1,333,269	+				+2.0
1,333,449	-		Atu4210	0.20	-1.4
1,333,510	+		Atu4210	0.26	+0.0
1,333,515	+		Atu4210	0.26	-0.9
1,333,545	-		Atu4210	0.29	-0.7
1,333,545	-		Atu4210	0.29	-0.9
1,333,638	+		Atu4210	0.38	+0.2
1,333,669	-		Atu4210	0.41	-1.1
1,333,671	+		Atu4210	0.41	-0.7
1,333,863	+		Atu4210	0.59	+0.3
1,333,866	-		Atu4210	0.59	-0.6
1,333,942	-		Atu4210	0.66	-1.0
1,333,978	+		Atu4210	0.70	-0.1
1,333,993	-		Atu4210	0.71	+0.0
1,334,044	-		Atu4210	0.76	+0.1
1,334,072	-		Atu4210	0.79	-0.1
1,334,082	+		Atu4210	0.80	+0.0
1,334,091	+		Atu4210	0.80	+0.6
1,334,151	-		Atu4210	0.86	-0.2
1,334,156	-		Atu4210	0.87	-0.4
1,334,168	+		Atu4210	0.88	-0.8
1,334,168	+		Atu4210	0.88	-0.6
1,334,245	-				-0.3
1,334,245	-				-0.3
1,334,246	-				+0.4
1,334,285	+				+0.2
1,334,342	+				+0.1
1,334,676	-		Atu4211	0.34	-0.1
1,334,676	-		Atu4211	0.34	+0.9
1,334,714	+		Atu4211	0.37	-1.8
1,334,729	+		Atu4211	0.38	+0.4
1,334,806	+		Atu4211	0.45	+2.2
1,334,806	+		Atu4211	0.45	-0.4
1,334,814	-		Atu4211	0.46	+0.1
1,334,814	-		Atu4211	0.46	+0.3
1,334,825	+		Atu4211	0.47	+0.7
1,334,825	+		Atu4211	0.47	+0.7
1,334,827	+		Atu4211	0.47	-0.0
1,334,827	+		Atu4211	0.47	+1.0
1,334,827	+		Atu4211	0.47	-0.1
1,334,835	-		Atu4211	0.48	+0.2
1,334,882	-		Atu4211	0.52	-0.3
1,334,906	-		Atu4211	0.54	+0.5
1,335,037	+		Atu4211	0.66	+0.0
1,335,072	+		Atu4211	0.69	-1.0
1,335,108	+		Atu4211	0.72	+0.2
1,335,111	-		Atu4211	0.73	-0.5
1,335,111	-		Atu4211	0.73	-1.4
1,335,139	+		Atu4211	0.75	+0.4
1,335,143	-		Atu4211	0.75	+0.4
1,335,205	+		Atu4211	0.81	-0.3
1,335,268	-		Atu4211	0.87	+0.4
1,335,281	+		Atu4211	0.88	-0.0