Experiment: R2A with silver chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3640 and Atu3641 overlap by 4 nucleotides Atu3641 and Atu3642 are separated by 13 nucleotides
Atu3640: Atu3640 - hypothetical protein, at 692,241 to 693,821
Atu3640
Atu3641: Atu3641 - hypothetical protein, at 693,818 to 694,927
Atu3641
Atu3642: Atu3642 - vgrG protein, at 694,941 to 697,205
Atu3642
Position (kb) 693
694
695 Strain fitness (log2 ratio) -2
-1
0
1
2 at 692.825 kb on - strand, within Atu3640 at 692.851 kb on + strand, within Atu3640 at 692.875 kb on + strand, within Atu3640 at 692.877 kb on - strand, within Atu3640 at 692.891 kb on - strand, within Atu3640 at 692.951 kb on - strand, within Atu3640 at 693.221 kb on + strand, within Atu3640 at 693.246 kb on + strand, within Atu3640 at 693.246 kb on + strand, within Atu3640 at 693.246 kb on + strand, within Atu3640 at 693.264 kb on + strand, within Atu3640 at 693.312 kb on - strand, within Atu3640 at 693.362 kb on + strand, within Atu3640 at 693.370 kb on - strand, within Atu3640 at 693.451 kb on + strand, within Atu3640 at 693.451 kb on + strand, within Atu3640 at 693.457 kb on - strand, within Atu3640 at 693.476 kb on - strand, within Atu3640 at 693.481 kb on - strand, within Atu3640 at 693.501 kb on + strand, within Atu3640 at 693.557 kb on - strand, within Atu3640 at 693.582 kb on - strand, within Atu3640 at 693.588 kb on - strand, within Atu3640 at 693.603 kb on - strand, within Atu3640 at 693.652 kb on + strand, within Atu3640 at 693.706 kb on - strand at 693.723 kb on + strand at 693.780 kb on + strand at 693.875 kb on - strand at 693.877 kb on + strand at 693.877 kb on + strand at 693.885 kb on - strand at 693.934 kb on + strand, within Atu3641 at 693.934 kb on - strand, within Atu3641 at 693.934 kb on - strand, within Atu3641 at 693.975 kb on + strand, within Atu3641 at 694.063 kb on + strand, within Atu3641 at 694.101 kb on + strand, within Atu3641 at 694.109 kb on - strand, within Atu3641 at 694.109 kb on - strand, within Atu3641 at 694.109 kb on - strand, within Atu3641 at 694.215 kb on - strand, within Atu3641 at 694.253 kb on - strand, within Atu3641 at 694.256 kb on + strand, within Atu3641 at 694.321 kb on - strand, within Atu3641 at 694.373 kb on + strand, within Atu3641 at 694.443 kb on - strand, within Atu3641 at 694.539 kb on - strand, within Atu3641 at 694.685 kb on + strand, within Atu3641 at 694.693 kb on - strand, within Atu3641 at 694.743 kb on - strand, within Atu3641 at 694.809 kb on + strand, within Atu3641 at 694.809 kb on + strand, within Atu3641 at 694.812 kb on - strand, within Atu3641 at 694.834 kb on - strand at 694.890 kb on - strand at 694.913 kb on + strand at 694.913 kb on + strand at 694.993 kb on + strand at 694.995 kb on + strand at 695.002 kb on + strand at 695.081 kb on - strand at 695.092 kb on + strand at 695.154 kb on + strand at 695.168 kb on + strand, within Atu3642 at 695.196 kb on - strand, within Atu3642 at 695.381 kb on - strand, within Atu3642 at 695.408 kb on - strand, within Atu3642 at 695.410 kb on - strand, within Atu3642 at 695.413 kb on - strand, within Atu3642 at 695.421 kb on + strand, within Atu3642 at 695.429 kb on - strand, within Atu3642 at 695.429 kb on - strand, within Atu3642 at 695.858 kb on + strand, within Atu3642
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with silver chloride 5 mM remove 692,825 - Atu3640 0.37 +0.5 692,851 + Atu3640 0.39 -0.0 692,875 + Atu3640 0.40 -0.0 692,877 - Atu3640 0.40 -0.4 692,891 - Atu3640 0.41 -0.2 692,951 - Atu3640 0.45 +1.1 693,221 + Atu3640 0.62 +1.3 693,246 + Atu3640 0.64 -0.6 693,246 + Atu3640 0.64 -0.0 693,246 + Atu3640 0.64 +0.3 693,264 + Atu3640 0.65 -1.1 693,312 - Atu3640 0.68 +0.6 693,362 + Atu3640 0.71 +1.1 693,370 - Atu3640 0.71 +1.5 693,451 + Atu3640 0.77 -0.0 693,451 + Atu3640 0.77 -0.9 693,457 - Atu3640 0.77 +0.4 693,476 - Atu3640 0.78 +1.1 693,481 - Atu3640 0.78 -0.2 693,501 + Atu3640 0.80 +0.8 693,557 - Atu3640 0.83 +0.8 693,582 - Atu3640 0.85 +0.6 693,588 - Atu3640 0.85 +0.8 693,603 - Atu3640 0.86 +0.8 693,652 + Atu3640 0.89 -0.2 693,706 - -0.2 693,723 + +0.5 693,780 + +0.1 693,875 - +1.0 693,877 + -0.1 693,877 + -0.7 693,885 - +2.4 693,934 + Atu3641 0.10 +0.3 693,934 - Atu3641 0.10 +0.5 693,934 - Atu3641 0.10 +0.8 693,975 + Atu3641 0.14 +1.1 694,063 + Atu3641 0.22 +0.0 694,101 + Atu3641 0.25 -0.2 694,109 - Atu3641 0.26 +0.5 694,109 - Atu3641 0.26 +0.2 694,109 - Atu3641 0.26 +0.3 694,215 - Atu3641 0.36 +1.1 694,253 - Atu3641 0.39 +0.9 694,256 + Atu3641 0.39 +0.6 694,321 - Atu3641 0.45 -1.5 694,373 + Atu3641 0.50 +0.3 694,443 - Atu3641 0.56 -0.1 694,539 - Atu3641 0.65 +0.3 694,685 + Atu3641 0.78 +0.6 694,693 - Atu3641 0.79 +0.5 694,743 - Atu3641 0.83 -0.0 694,809 + Atu3641 0.89 +0.3 694,809 + Atu3641 0.89 +0.4 694,812 - Atu3641 0.90 +0.2 694,834 - +0.8 694,890 - +0.3 694,913 + +0.3 694,913 + -0.1 694,993 + -2.0 694,995 + -0.2 695,002 + -0.8 695,081 - +0.5 695,092 + +0.6 695,154 + +0.3 695,168 + Atu3642 0.10 -0.4 695,196 - Atu3642 0.11 +0.1 695,381 - Atu3642 0.19 +0.8 695,408 - Atu3642 0.21 +0.2 695,410 - Atu3642 0.21 +0.1 695,413 - Atu3642 0.21 -0.5 695,421 + Atu3642 0.21 -0.1 695,429 - Atu3642 0.22 +0.2 695,429 - Atu3642 0.22 -0.7 695,858 + Atu3642 0.40 +0.2
Or see this region's nucleotide sequence