Experiment: R2A with silver chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3638 and Atu3639 are separated by 3 nucleotides Atu3639 and Atu3640 are separated by 2 nucleotides Atu3640 and Atu3641 overlap by 4 nucleotides
Atu3638: Atu3638 - hypothetical protein, at 690,379 to 691,503
Atu3638
Atu3639: Atu3639 - hypothetical protein, at 691,507 to 692,238
Atu3639
Atu3640: Atu3640 - hypothetical protein, at 692,241 to 693,821
Atu3640
Atu3641: Atu3641 - hypothetical protein, at 693,818 to 694,927
Atu3641
Position (kb) 692
693
694 Strain fitness (log2 ratio) -1
0
1
2 at 691.252 kb on - strand, within Atu3638 at 691.252 kb on - strand, within Atu3638 at 691.318 kb on - strand, within Atu3638 at 691.323 kb on + strand, within Atu3638 at 691.323 kb on + strand, within Atu3638 at 691.323 kb on + strand, within Atu3638 at 691.323 kb on + strand, within Atu3638 at 691.323 kb on + strand, within Atu3638 at 691.323 kb on + strand, within Atu3638 at 691.323 kb on + strand, within Atu3638 at 691.331 kb on - strand, within Atu3638 at 691.331 kb on - strand, within Atu3638 at 691.331 kb on - strand, within Atu3638 at 691.331 kb on - strand, within Atu3638 at 691.331 kb on - strand, within Atu3638 at 691.362 kb on + strand, within Atu3638 at 691.363 kb on + strand, within Atu3638 at 691.381 kb on - strand, within Atu3638 at 691.381 kb on - strand, within Atu3638 at 691.456 kb on + strand at 691.506 kb on - strand at 691.511 kb on - strand at 691.544 kb on - strand at 692.261 kb on + strand at 692.319 kb on + strand at 692.386 kb on + strand at 692.565 kb on + strand, within Atu3640 at 692.565 kb on + strand, within Atu3640 at 692.573 kb on - strand, within Atu3640 at 692.573 kb on - strand, within Atu3640 at 692.633 kb on - strand, within Atu3640 at 692.817 kb on + strand, within Atu3640 at 692.825 kb on - strand, within Atu3640 at 692.851 kb on + strand, within Atu3640 at 692.875 kb on + strand, within Atu3640 at 692.877 kb on - strand, within Atu3640 at 692.891 kb on - strand, within Atu3640 at 692.951 kb on - strand, within Atu3640 at 693.221 kb on + strand, within Atu3640 at 693.246 kb on + strand, within Atu3640 at 693.246 kb on + strand, within Atu3640 at 693.246 kb on + strand, within Atu3640 at 693.264 kb on + strand, within Atu3640 at 693.312 kb on - strand, within Atu3640 at 693.362 kb on + strand, within Atu3640 at 693.370 kb on - strand, within Atu3640 at 693.451 kb on + strand, within Atu3640 at 693.451 kb on + strand, within Atu3640 at 693.457 kb on - strand, within Atu3640 at 693.481 kb on - strand, within Atu3640 at 693.501 kb on + strand, within Atu3640 at 693.557 kb on - strand, within Atu3640 at 693.582 kb on - strand, within Atu3640 at 693.588 kb on - strand, within Atu3640 at 693.603 kb on - strand, within Atu3640 at 693.652 kb on + strand, within Atu3640 at 693.706 kb on - strand at 693.723 kb on + strand at 693.780 kb on + strand at 693.875 kb on - strand at 693.877 kb on + strand at 693.877 kb on + strand at 693.885 kb on - strand at 693.934 kb on + strand, within Atu3641 at 693.934 kb on - strand, within Atu3641 at 693.934 kb on - strand, within Atu3641 at 693.975 kb on + strand, within Atu3641 at 694.063 kb on + strand, within Atu3641 at 694.101 kb on + strand, within Atu3641 at 694.109 kb on - strand, within Atu3641 at 694.109 kb on - strand, within Atu3641 at 694.109 kb on - strand, within Atu3641 at 694.215 kb on - strand, within Atu3641 at 694.253 kb on - strand, within Atu3641 at 694.256 kb on + strand, within Atu3641 at 694.321 kb on - strand, within Atu3641 at 694.373 kb on + strand, within Atu3641 at 694.443 kb on - strand, within Atu3641 at 694.539 kb on - strand, within Atu3641 at 694.685 kb on + strand, within Atu3641 at 694.693 kb on - strand, within Atu3641 at 694.743 kb on - strand, within Atu3641 at 694.809 kb on + strand, within Atu3641 at 694.809 kb on + strand, within Atu3641 at 694.812 kb on - strand, within Atu3641
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with silver chloride 5 mM remove 691,252 - Atu3638 0.78 +0.4 691,252 - Atu3638 0.78 +1.1 691,318 - Atu3638 0.83 +0.5 691,323 + Atu3638 0.84 -0.3 691,323 + Atu3638 0.84 +0.8 691,323 + Atu3638 0.84 +0.5 691,323 + Atu3638 0.84 +0.4 691,323 + Atu3638 0.84 +0.1 691,323 + Atu3638 0.84 +0.1 691,323 + Atu3638 0.84 +0.2 691,331 - Atu3638 0.85 +0.1 691,331 - Atu3638 0.85 +0.1 691,331 - Atu3638 0.85 +0.7 691,331 - Atu3638 0.85 -0.3 691,331 - Atu3638 0.85 -0.1 691,362 + Atu3638 0.87 +0.6 691,363 + Atu3638 0.87 +0.4 691,381 - Atu3638 0.89 -0.1 691,381 - Atu3638 0.89 +0.4 691,456 + +0.1 691,506 - +0.0 691,511 - +0.2 691,544 - -0.3 692,261 + +0.4 692,319 + -0.3 692,386 + +0.9 692,565 + Atu3640 0.20 +0.1 692,565 + Atu3640 0.20 +0.5 692,573 - Atu3640 0.21 +0.3 692,573 - Atu3640 0.21 +0.4 692,633 - Atu3640 0.25 +0.9 692,817 + Atu3640 0.36 +0.4 692,825 - Atu3640 0.37 +0.5 692,851 + Atu3640 0.39 -0.0 692,875 + Atu3640 0.40 -0.0 692,877 - Atu3640 0.40 -0.4 692,891 - Atu3640 0.41 -0.2 692,951 - Atu3640 0.45 +1.1 693,221 + Atu3640 0.62 +1.3 693,246 + Atu3640 0.64 -0.6 693,246 + Atu3640 0.64 -0.0 693,246 + Atu3640 0.64 +0.3 693,264 + Atu3640 0.65 -1.1 693,312 - Atu3640 0.68 +0.6 693,362 + Atu3640 0.71 +1.1 693,370 - Atu3640 0.71 +1.5 693,451 + Atu3640 0.77 -0.0 693,451 + Atu3640 0.77 -0.9 693,457 - Atu3640 0.77 +0.4 693,481 - Atu3640 0.78 -0.2 693,501 + Atu3640 0.80 +0.8 693,557 - Atu3640 0.83 +0.8 693,582 - Atu3640 0.85 +0.6 693,588 - Atu3640 0.85 +0.8 693,603 - Atu3640 0.86 +0.8 693,652 + Atu3640 0.89 -0.2 693,706 - -0.2 693,723 + +0.5 693,780 + +0.1 693,875 - +1.0 693,877 + -0.1 693,877 + -0.7 693,885 - +2.4 693,934 + Atu3641 0.10 +0.3 693,934 - Atu3641 0.10 +0.5 693,934 - Atu3641 0.10 +0.8 693,975 + Atu3641 0.14 +1.1 694,063 + Atu3641 0.22 +0.0 694,101 + Atu3641 0.25 -0.2 694,109 - Atu3641 0.26 +0.5 694,109 - Atu3641 0.26 +0.2 694,109 - Atu3641 0.26 +0.3 694,215 - Atu3641 0.36 +1.1 694,253 - Atu3641 0.39 +0.9 694,256 + Atu3641 0.39 +0.6 694,321 - Atu3641 0.45 -1.5 694,373 + Atu3641 0.50 +0.3 694,443 - Atu3641 0.56 -0.1 694,539 - Atu3641 0.65 +0.3 694,685 + Atu3641 0.78 +0.6 694,693 - Atu3641 0.79 +0.5 694,743 - Atu3641 0.83 -0.0 694,809 + Atu3641 0.89 +0.3 694,809 + Atu3641 0.89 +0.4 694,812 - Atu3641 0.90 +0.2
Or see this region's nucleotide sequence