Strain Fitness in Agrobacterium fabrum C58 around Atu3521
Experiment: R2A with silver chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with silver chloride 5 mM |
---|---|---|---|---|---|
remove | |||||
570,003 | - | -0.2 | |||
570,052 | + | +1.4 | |||
570,083 | - | +0.2 | |||
570,243 | + | Atu3521 | 0.15 | +0.4 | |
570,442 | + | Atu3521 | 0.37 | +0.1 | |
570,442 | + | Atu3521 | 0.37 | -0.2 | |
570,475 | - | Atu3521 | 0.40 | +1.5 | |
570,604 | - | Atu3521 | 0.55 | +2.3 | |
570,633 | - | Atu3521 | 0.58 | -0.7 | |
570,731 | - | Atu3521 | 0.69 | +0.8 | |
570,795 | + | Atu3521 | 0.76 | +2.2 | |
570,837 | + | Atu3521 | 0.81 | +0.5 | |
570,931 | + | +0.3 | |||
571,135 | - | +0.2 | |||
571,137 | - | -0.2 | |||
571,147 | - | -0.6 | |||
571,172 | + | -1.1 | |||
571,172 | + | +0.2 | |||
571,212 | - | Atu3522 | 0.10 | -0.8 | |
571,229 | + | Atu3522 | 0.12 | -0.6 | |
571,252 | + | Atu3522 | 0.14 | +0.2 | |
571,698 | - | Atu3522 | 0.51 | -0.3 |
Or see this region's nucleotide sequence