Strain Fitness in Agrobacterium fabrum C58 around Atu3043

Experiment: R2A with silver chloride 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu3042 and Atu3043 overlap by 4 nucleotidesAtu3043 and Atu3044 are separated by 44 nucleotides Atu3042: Atu3042 - hypothetical protein, at 38,070 to 39,146 Atu3042 Atu3043: Atu3043 - hydantoinase beta subunit-like protein, at 39,143 to 40,681 Atu3043 Atu3044: Atu3044 - asparaginase, at 40,726 to 41,670 Atu3044 Position (kb) 39 40 41Strain fitness (log2 ratio) -2 -1 0 1 2at 38.215 kb on - strand, within Atu3042at 38.223 kb on - strand, within Atu3042at 38.289 kb on + strand, within Atu3042at 38.330 kb on - strand, within Atu3042at 38.397 kb on + strand, within Atu3042at 38.397 kb on + strand, within Atu3042at 38.475 kb on + strand, within Atu3042at 38.681 kb on + strand, within Atu3042at 38.792 kb on + strand, within Atu3042at 38.833 kb on + strand, within Atu3042at 39.027 kb on - strand, within Atu3042at 39.037 kb on - strand, within Atu3042at 39.039 kb on + strandat 39.081 kb on - strandat 39.156 kb on + strandat 39.164 kb on - strandat 39.245 kb on + strandat 39.258 kb on - strandat 39.263 kb on - strandat 39.330 kb on + strand, within Atu3043at 39.338 kb on - strand, within Atu3043at 39.361 kb on - strand, within Atu3043at 39.391 kb on + strand, within Atu3043at 39.393 kb on + strand, within Atu3043at 39.454 kb on - strand, within Atu3043at 39.454 kb on - strand, within Atu3043at 39.467 kb on + strand, within Atu3043at 39.624 kb on + strand, within Atu3043at 39.673 kb on + strand, within Atu3043at 39.681 kb on - strand, within Atu3043at 39.692 kb on - strand, within Atu3043at 39.705 kb on + strand, within Atu3043at 39.705 kb on + strand, within Atu3043at 39.733 kb on + strand, within Atu3043at 39.741 kb on - strand, within Atu3043at 39.751 kb on - strand, within Atu3043at 39.753 kb on + strand, within Atu3043at 39.822 kb on + strand, within Atu3043at 39.878 kb on + strand, within Atu3043at 39.899 kb on - strand, within Atu3043at 39.923 kb on + strand, within Atu3043at 40.068 kb on + strand, within Atu3043at 40.253 kb on - strand, within Atu3043at 40.283 kb on + strand, within Atu3043at 40.283 kb on + strand, within Atu3043at 40.302 kb on - strand, within Atu3043at 40.308 kb on - strand, within Atu3043at 40.332 kb on - strand, within Atu3043at 40.332 kb on - strand, within Atu3043at 40.402 kb on - strand, within Atu3043at 40.440 kb on + strand, within Atu3043at 40.461 kb on + strand, within Atu3043at 40.507 kb on - strand, within Atu3043at 40.525 kb on - strand, within Atu3043at 40.568 kb on - strandat 40.743 kb on + strandat 40.841 kb on + strand, within Atu3044at 40.920 kb on + strand, within Atu3044at 41.238 kb on + strand, within Atu3044at 41.531 kb on + strand, within Atu3044at 41.539 kb on - strand, within Atu3044at 41.554 kb on - strand, within Atu3044at 41.572 kb on + strand, within Atu3044at 41.577 kb on + strandat 41.577 kb on + strandat 41.583 kb on - strandat 41.590 kb on + strandat 41.643 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with silver chloride 5 mM
remove
38,215 - Atu3042 0.13 +0.7
38,223 - Atu3042 0.14 -0.3
38,289 + Atu3042 0.20 +0.6
38,330 - Atu3042 0.24 -2.0
38,397 + Atu3042 0.30 -0.6
38,397 + Atu3042 0.30 -1.8
38,475 + Atu3042 0.38 -0.2
38,681 + Atu3042 0.57 -1.0
38,792 + Atu3042 0.67 -0.7
38,833 + Atu3042 0.71 -0.3
39,027 - Atu3042 0.89 -1.0
39,037 - Atu3042 0.90 -0.4
39,039 + -0.8
39,081 - -0.3
39,156 + +0.1
39,164 - -0.1
39,245 + -0.6
39,258 - -1.0
39,263 - -0.3
39,330 + Atu3043 0.12 -1.0
39,338 - Atu3043 0.13 -0.2
39,361 - Atu3043 0.14 -0.4
39,391 + Atu3043 0.16 -0.3
39,393 + Atu3043 0.16 +0.2
39,454 - Atu3043 0.20 -0.1
39,454 - Atu3043 0.20 +0.2
39,467 + Atu3043 0.21 -0.6
39,624 + Atu3043 0.31 +0.4
39,673 + Atu3043 0.34 -0.1
39,681 - Atu3043 0.35 -0.6
39,692 - Atu3043 0.36 +1.8
39,705 + Atu3043 0.37 -0.7
39,705 + Atu3043 0.37 -0.6
39,733 + Atu3043 0.38 -0.5
39,741 - Atu3043 0.39 -0.4
39,751 - Atu3043 0.40 -0.9
39,753 + Atu3043 0.40 +0.7
39,822 + Atu3043 0.44 -0.9
39,878 + Atu3043 0.48 -0.9
39,899 - Atu3043 0.49 -0.5
39,923 + Atu3043 0.51 -0.3
40,068 + Atu3043 0.60 -0.3
40,253 - Atu3043 0.72 +0.3
40,283 + Atu3043 0.74 -1.5
40,283 + Atu3043 0.74 -0.3
40,302 - Atu3043 0.75 -0.7
40,308 - Atu3043 0.76 -0.5
40,332 - Atu3043 0.77 +0.1
40,332 - Atu3043 0.77 -0.8
40,402 - Atu3043 0.82 -0.9
40,440 + Atu3043 0.84 +0.4
40,461 + Atu3043 0.86 -0.9
40,507 - Atu3043 0.89 +0.1
40,525 - Atu3043 0.90 -1.1
40,568 - -0.4
40,743 + +0.1
40,841 + Atu3044 0.12 -0.5
40,920 + Atu3044 0.21 -0.8
41,238 + Atu3044 0.54 +1.1
41,531 + Atu3044 0.85 -0.5
41,539 - Atu3044 0.86 -0.4
41,554 - Atu3044 0.88 +1.1
41,572 + Atu3044 0.90 +1.6
41,577 + -1.5
41,577 + -0.8
41,583 - -0.6
41,590 + -0.2
41,643 + -0.0

Or see this region's nucleotide sequence