Experiment: R2A with silver chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3038 and Atu3039 are separated by 16 nucleotides Atu3039 and Atu3040 overlap by 8 nucleotides
Atu3038: Atu3038 - dipeptide ABC transporter ATPase, at 31,952 to 33,598
Atu3038
Atu3039: Atu3039 - hydantoinase beta subunit-like protein, at 33,615 to 35,171
Atu3039
Atu3040: Atu3040 - hypothetical protein, at 35,164 to 36,297
Atu3040
Position (kb) 33
34
35
36 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 32.661 kb on - strand, within Atu3038 at 32.676 kb on - strand, within Atu3038 at 32.686 kb on - strand, within Atu3038 at 32.688 kb on + strand, within Atu3038 at 32.731 kb on + strand, within Atu3038 at 33.057 kb on + strand, within Atu3038 at 33.207 kb on - strand, within Atu3038 at 33.218 kb on - strand, within Atu3038 at 33.414 kb on + strand, within Atu3038 at 33.437 kb on + strand at 33.490 kb on - strand at 33.535 kb on - strand at 33.725 kb on - strand at 33.740 kb on - strand at 33.749 kb on + strand at 33.773 kb on - strand, within Atu3039 at 33.946 kb on + strand, within Atu3039 at 33.946 kb on + strand, within Atu3039 at 33.953 kb on + strand, within Atu3039 at 34.103 kb on - strand, within Atu3039 at 34.153 kb on + strand, within Atu3039 at 34.260 kb on + strand, within Atu3039 at 34.299 kb on + strand, within Atu3039 at 34.317 kb on - strand, within Atu3039 at 34.337 kb on - strand, within Atu3039 at 34.350 kb on + strand, within Atu3039 at 34.353 kb on - strand, within Atu3039 at 34.407 kb on + strand, within Atu3039 at 34.415 kb on - strand, within Atu3039 at 34.418 kb on - strand, within Atu3039 at 34.567 kb on + strand, within Atu3039 at 34.575 kb on - strand, within Atu3039 at 34.657 kb on + strand, within Atu3039 at 34.665 kb on - strand, within Atu3039 at 34.699 kb on + strand, within Atu3039 at 34.745 kb on + strand, within Atu3039 at 34.800 kb on - strand, within Atu3039 at 34.902 kb on - strand, within Atu3039 at 34.913 kb on + strand, within Atu3039 at 34.913 kb on + strand, within Atu3039 at 34.938 kb on + strand, within Atu3039 at 34.951 kb on - strand, within Atu3039 at 34.972 kb on - strand, within Atu3039 at 35.065 kb on + strand at 35.065 kb on + strand at 35.132 kb on + strand at 35.256 kb on + strand at 35.362 kb on - strand, within Atu3040 at 35.373 kb on + strand, within Atu3040 at 35.401 kb on + strand, within Atu3040 at 35.440 kb on + strand, within Atu3040 at 35.448 kb on - strand, within Atu3040 at 35.551 kb on - strand, within Atu3040 at 35.665 kb on + strand, within Atu3040 at 35.677 kb on + strand, within Atu3040 at 35.680 kb on + strand, within Atu3040 at 35.719 kb on + strand, within Atu3040 at 35.725 kb on + strand, within Atu3040 at 35.727 kb on - strand, within Atu3040 at 35.733 kb on - strand, within Atu3040 at 35.797 kb on + strand, within Atu3040 at 35.805 kb on - strand, within Atu3040 at 35.892 kb on + strand, within Atu3040 at 35.989 kb on - strand, within Atu3040 at 35.999 kb on - strand, within Atu3040 at 36.127 kb on - strand, within Atu3040
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with silver chloride 5 mM remove 32,661 - Atu3038 0.43 +0.8 32,676 - Atu3038 0.44 -0.1 32,686 - Atu3038 0.45 -0.2 32,688 + Atu3038 0.45 +0.8 32,731 + Atu3038 0.47 -0.6 33,057 + Atu3038 0.67 -0.7 33,207 - Atu3038 0.76 -0.8 33,218 - Atu3038 0.77 -2.3 33,414 + Atu3038 0.89 -1.2 33,437 + -0.2 33,490 - +0.3 33,535 - -0.0 33,725 - -0.3 33,740 - -1.0 33,749 + -3.2 33,773 - Atu3039 0.10 -1.9 33,946 + Atu3039 0.21 +1.0 33,946 + Atu3039 0.21 -1.7 33,953 + Atu3039 0.22 +0.0 34,103 - Atu3039 0.31 -1.0 34,153 + Atu3039 0.35 -1.2 34,260 + Atu3039 0.41 +0.9 34,299 + Atu3039 0.44 -0.5 34,317 - Atu3039 0.45 +0.1 34,337 - Atu3039 0.46 -0.2 34,350 + Atu3039 0.47 -1.6 34,353 - Atu3039 0.47 -0.5 34,407 + Atu3039 0.51 -0.2 34,415 - Atu3039 0.51 -0.6 34,418 - Atu3039 0.52 -1.2 34,567 + Atu3039 0.61 -1.0 34,575 - Atu3039 0.62 -0.4 34,657 + Atu3039 0.67 +0.2 34,665 - Atu3039 0.67 -0.6 34,699 + Atu3039 0.70 -0.2 34,745 + Atu3039 0.73 -0.8 34,800 - Atu3039 0.76 -0.5 34,902 - Atu3039 0.83 -0.5 34,913 + Atu3039 0.83 -0.2 34,913 + Atu3039 0.83 +0.5 34,938 + Atu3039 0.85 -1.4 34,951 - Atu3039 0.86 -0.5 34,972 - Atu3039 0.87 -0.3 35,065 + -0.4 35,065 + -0.1 35,132 + -0.0 35,256 + -1.9 35,362 - Atu3040 0.17 +0.0 35,373 + Atu3040 0.18 -0.7 35,401 + Atu3040 0.21 +0.3 35,440 + Atu3040 0.24 -1.3 35,448 - Atu3040 0.25 +0.1 35,551 - Atu3040 0.34 -0.4 35,665 + Atu3040 0.44 -0.2 35,677 + Atu3040 0.45 -1.4 35,680 + Atu3040 0.46 -0.7 35,719 + Atu3040 0.49 -0.5 35,725 + Atu3040 0.49 -0.4 35,727 - Atu3040 0.50 -0.4 35,733 - Atu3040 0.50 -0.9 35,797 + Atu3040 0.56 -2.0 35,805 - Atu3040 0.57 -0.7 35,892 + Atu3040 0.64 +1.4 35,989 - Atu3040 0.73 +0.1 35,999 - Atu3040 0.74 -0.5 36,127 - Atu3040 0.85 -0.4
Or see this region's nucleotide sequence