Strain Fitness in Agrobacterium fabrum C58 around Atu2180

Experiment: R2A with silver chloride 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with silver chloride 5 mM
2,154,935	+		Atu2179	0.29	+0.1
2,154,935	+		Atu2179	0.29	+0.9
2,154,987	-		Atu2179	0.34	+0.6
2,155,077	+		Atu2179	0.41	+0.1
2,155,124	-		Atu2179	0.46	+0.2
2,155,159	-		Atu2179	0.49	-0.4
2,155,337	+		Atu2179	0.64	+1.6
2,155,345	-		Atu2179	0.65	+0.3
2,155,394	+		Atu2179	0.69	-0.4
2,155,431	-		Atu2179	0.72	-0.7
2,155,486	+		Atu2179	0.77	+0.8
2,155,486	+		Atu2179	0.77	-0.0
2,155,491	+		Atu2179	0.78	+0.2
2,155,491	+		Atu2179	0.78	+0.0
2,155,491	+		Atu2179	0.78	-0.8
2,155,494	-		Atu2179	0.78	-0.7
2,155,499	-		Atu2179	0.78	+0.1
2,155,585	+		Atu2179	0.86	-0.1
2,155,585	+		Atu2179	0.86	-0.8
2,155,585	+		Atu2179	0.86	-0.2
2,155,585	+		Atu2179	0.86	-0.7
2,155,593	-		Atu2179	0.87	+0.5
2,155,593	-		Atu2179	0.87	+0.2
2,155,593	-		Atu2179	0.87	-0.0
2,155,593	-		Atu2179	0.87	+0.3
2,155,593	-		Atu2179	0.87	-1.1
2,155,593	-		Atu2179	0.87	-0.5
2,155,665	-				-0.4
2,155,681	+				+0.6
2,155,689	-				+0.8
2,155,968	-				+0.2
2,156,017	-				+0.2
2,156,019	+				-0.3
2,156,093	-		Atu2180	0.14	-0.0
2,156,243	+		Atu2180	0.24	+1.7
2,156,264	+		Atu2180	0.25	+0.2
2,156,326	+		Atu2180	0.30	+0.4
2,156,409	-		Atu2180	0.35	-0.1
2,156,441	-		Atu2180	0.38	+0.4
2,156,564	+		Atu2180	0.46	+1.0
2,156,590	+		Atu2180	0.48	+1.3
2,156,614	-		Atu2180	0.50	-0.1
2,156,773	+		Atu2180	0.61	+1.9
2,156,779	-		Atu2180	0.61	+0.2
2,156,791	+		Atu2180	0.62	+0.2
2,156,791	+		Atu2180	0.62	-0.2
2,156,791	-		Atu2180	0.62	+0.1
2,156,825	-		Atu2180	0.64	-0.0
2,157,001	-		Atu2180	0.76	+1.5
2,157,126	-		Atu2180	0.85	+0.4
2,157,133	-		Atu2180	0.85	-0.2
2,157,146	-		Atu2180	0.86	-0.0
2,157,177	-		Atu2180	0.89	-0.0
2,157,282	+				+0.0
2,157,348	-				+0.0
2,157,348	-				-0.1
2,157,389	+				+0.8
2,157,441	+				-0.1
2,157,449	-				-0.0
2,157,449	-				-0.2
2,157,497	+		Atu2181	0.13	-2.2
2,157,582	+		Atu2181	0.19	+0.2
2,157,632	-		Atu2181	0.24	+0.2
2,157,654	-		Atu2181	0.25	-1.8
2,157,714	-		Atu2181	0.30	+0.4
2,157,824	+		Atu2181	0.39	-0.3
2,157,852	+		Atu2181	0.41	+0.1
2,157,920	+		Atu2181	0.47	+0.2
2,158,056	+		Atu2181	0.58	+0.5
2,158,082	+		Atu2181	0.60	+0.0
2,158,087	+		Atu2181	0.60	+0.0
2,158,087	+		Atu2181	0.60	+0.5
2,158,102	+		Atu2181	0.62	+0.2
2,158,256	+		Atu2181	0.74	+0.5
2,158,271	+		Atu2181	0.75	+0.1
2,158,277	+		Atu2181	0.76	-0.1
2,158,314	-		Atu2181	0.79	-0.1
2,158,314	-		Atu2181	0.79	+0.5