Strain Fitness in Agrobacterium fabrum C58 around Atu1155

Experiment: R2A with silver chloride 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with silver chloride 5 mM
1,146,527	+				-1.1
1,146,531	-				+1.2
1,146,548	+				-0.3
1,146,548	+				+2.1
1,146,548	+				+0.0
1,146,556	-				+0.4
1,146,556	-				-0.5
1,146,556	-				-0.5
1,146,556	-				-0.4
1,146,684	+		Atu1154	0.35	+0.5
1,146,696	+		Atu1154	0.38	-1.6
1,146,787	-		Atu1154	0.57	+0.4
1,146,803	+		Atu1154	0.60	-0.7
1,146,880	+		Atu1154	0.77	+0.2
1,147,004	-				+0.5
1,147,050	-				+0.1
1,147,061	-				-0.6
1,147,136	+				+4.3
1,147,435	+				+0.0
1,147,494	+		Atu1155	0.14	+0.2
1,147,494	+		Atu1155	0.14	-0.0
1,147,494	+		Atu1155	0.14	-0.2
1,147,546	-		Atu1155	0.17	+0.1
1,147,553	+		Atu1155	0.18	+0.0
1,147,559	-		Atu1155	0.18	+0.9
1,147,615	+		Atu1155	0.22	+1.0
1,147,615	+		Atu1155	0.22	+0.2
1,147,615	+		Atu1155	0.22	-1.7
1,147,623	-		Atu1155	0.23	+2.1
1,147,623	-		Atu1155	0.23	+1.3
1,147,623	-		Atu1155	0.23	+2.3
1,147,658	+		Atu1155	0.26	+0.0
1,147,681	-		Atu1155	0.27	+1.8
1,147,739	+		Atu1155	0.31	-0.4
1,147,762	+		Atu1155	0.33	+0.2
1,147,767	+		Atu1155	0.33	+0.6
1,147,785	+		Atu1155	0.35	+0.0
1,147,826	+		Atu1155	0.38	+0.2
1,147,907	-		Atu1155	0.44	-1.3
1,147,932	-		Atu1155	0.45	+1.3
1,147,955	+		Atu1155	0.47	+1.5
1,148,159	+		Atu1155	0.62	+0.0
1,148,166	-		Atu1155	0.62	-0.2
1,148,198	-		Atu1155	0.65	-0.0
1,148,321	+		Atu1155	0.73	+1.3
1,148,332	-		Atu1155	0.74	+0.1
1,148,350	-		Atu1155	0.75	-0.3
1,148,359	-		Atu1155	0.76	+0.6
1,148,370	+		Atu1155	0.77	-1.2
1,148,436	+		Atu1155	0.82	+0.7
1,148,457	+		Atu1155	0.83	+0.5
1,148,504	-		Atu1155	0.87	-0.8
1,148,506	+		Atu1155	0.87	+0.5
1,148,524	+		Atu1155	0.88	+0.1
1,148,524	+		Atu1155	0.88	+0.6
1,148,532	-		Atu1155	0.89	+0.7
1,148,585	+				+0.1
1,148,697	-				-0.4
1,148,747	+				+0.3
1,148,755	+				-0.2
1,148,775	-				+0.0
1,148,859	-				+1.6
1,148,861	+				+0.6
1,148,869	-				+0.9
1,149,048	+		Atu1156	0.10	+0.4
1,149,143	+		Atu1156	0.17	-1.1
1,149,151	-		Atu1156	0.17	+0.2
1,149,185	+		Atu1156	0.19	+0.8
1,149,193	+		Atu1156	0.20	-0.2
1,149,197	+		Atu1156	0.20	-0.1
1,149,234	+		Atu1156	0.23	+0.3
1,149,234	+		Atu1156	0.23	-0.1
1,149,241	+		Atu1156	0.23	+0.8
1,149,296	-		Atu1156	0.27	-0.9
1,149,315	+		Atu1156	0.28	+0.8
1,149,318	-		Atu1156	0.28	-1.5
1,149,333	+		Atu1156	0.29	-0.3
1,149,372	+		Atu1156	0.32	-0.1
1,149,437	-		Atu1156	0.36	-0.7
1,149,464	-		Atu1156	0.38	-0.7
1,149,472	-		Atu1156	0.39	-0.0
1,149,494	+		Atu1156	0.40	-0.1
1,149,503	-		Atu1156	0.41	+0.1
1,149,576	-		Atu1156	0.46	+1.5
1,149,594	-		Atu1156	0.47	-0.2
1,149,621	-		Atu1156	0.49	+1.5
1,149,639	+		Atu1156	0.50	-1.0