Experiment: R2A with silver chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0453 and Atu0454 overlap by 1 nucleotides Atu0454 and Atu8126 are separated by 208 nucleotides Atu8126 and Atu8127 are separated by 12 nucleotides
Atu0453: Atu0453 - hypothetical protein, at 448,012 to 448,758
Atu0453
Atu0454: Atu0454 - hypothetical protein, at 448,758 to 449,309
Atu0454
Atu8126: Atu8126 - putative phage tail protein I, at 449,518 to 450,183
Atu8126
Atu8127: Atu8127 - hypothetical protein, at 450,196 to 452,397
Atu8127
Position (kb) 448
449
450 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 447.760 kb on + strand at 447.772 kb on + strand at 447.850 kb on + strand at 447.859 kb on + strand at 447.874 kb on - strand at 447.931 kb on + strand at 447.978 kb on - strand at 448.009 kb on + strand at 448.017 kb on - strand at 448.038 kb on + strand at 448.046 kb on - strand at 448.064 kb on - strand at 448.113 kb on + strand, within Atu0453 at 448.118 kb on - strand, within Atu0453 at 448.157 kb on - strand, within Atu0453 at 448.164 kb on - strand, within Atu0453 at 448.199 kb on + strand, within Atu0453 at 448.199 kb on + strand, within Atu0453 at 448.370 kb on - strand, within Atu0453 at 448.376 kb on - strand, within Atu0453 at 448.381 kb on + strand, within Atu0453 at 448.381 kb on - strand, within Atu0453 at 448.478 kb on - strand, within Atu0453 at 448.522 kb on - strand, within Atu0453 at 448.548 kb on + strand, within Atu0453 at 448.661 kb on - strand, within Atu0453 at 448.716 kb on + strand at 448.738 kb on + strand at 448.746 kb on - strand at 448.747 kb on + strand at 448.781 kb on - strand at 448.880 kb on - strand, within Atu0454 at 448.882 kb on + strand, within Atu0454 at 448.890 kb on - strand, within Atu0454 at 448.891 kb on + strand, within Atu0454 at 448.900 kb on - strand, within Atu0454 at 448.905 kb on + strand, within Atu0454 at 448.923 kb on - strand, within Atu0454 at 448.973 kb on + strand, within Atu0454 at 448.973 kb on + strand, within Atu0454 at 448.973 kb on + strand, within Atu0454 at 448.981 kb on - strand, within Atu0454 at 448.981 kb on - strand, within Atu0454 at 449.227 kb on + strand, within Atu0454 at 449.288 kb on - strand at 449.294 kb on - strand at 449.342 kb on - strand at 449.457 kb on + strand at 449.472 kb on - strand at 449.525 kb on + strand at 449.525 kb on + strand at 449.533 kb on - strand at 449.533 kb on - strand at 449.606 kb on - strand, within Atu8126 at 449.622 kb on - strand, within Atu8126 at 449.622 kb on - strand, within Atu8126 at 449.622 kb on - strand, within Atu8126 at 449.775 kb on - strand, within Atu8126 at 449.868 kb on - strand, within Atu8126 at 449.920 kb on + strand, within Atu8126 at 449.930 kb on - strand, within Atu8126 at 449.975 kb on + strand, within Atu8126 at 450.109 kb on + strand, within Atu8126 at 450.110 kb on + strand, within Atu8126 at 450.177 kb on + strand at 450.179 kb on + strand at 450.180 kb on - strand at 450.191 kb on + strand at 450.192 kb on - strand at 450.272 kb on + strand at 450.308 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with silver chloride 5 mM remove 447,760 + -0.3 447,772 + -0.5 447,850 + -0.3 447,859 + -0.3 447,874 - +0.7 447,931 + +0.3 447,978 - -0.2 448,009 + +0.3 448,017 - -0.7 448,038 + -0.4 448,046 - -0.3 448,064 - -0.2 448,113 + Atu0453 0.14 -0.1 448,118 - Atu0453 0.14 +0.3 448,157 - Atu0453 0.19 -0.4 448,164 - Atu0453 0.20 -0.4 448,199 + Atu0453 0.25 +0.0 448,199 + Atu0453 0.25 -0.4 448,370 - Atu0453 0.48 +0.2 448,376 - Atu0453 0.49 -0.4 448,381 + Atu0453 0.49 -0.7 448,381 - Atu0453 0.49 -0.2 448,478 - Atu0453 0.62 -0.7 448,522 - Atu0453 0.68 -1.0 448,548 + Atu0453 0.72 +0.2 448,661 - Atu0453 0.87 -0.2 448,716 + -0.2 448,738 + -0.7 448,746 - -0.8 448,747 + -0.1 448,781 - -1.2 448,880 - Atu0454 0.22 -0.4 448,882 + Atu0454 0.22 -0.8 448,890 - Atu0454 0.24 -0.3 448,891 + Atu0454 0.24 -0.8 448,900 - Atu0454 0.26 -0.3 448,905 + Atu0454 0.27 -2.1 448,923 - Atu0454 0.30 -0.2 448,973 + Atu0454 0.39 -0.1 448,973 + Atu0454 0.39 -0.6 448,973 + Atu0454 0.39 -0.4 448,981 - Atu0454 0.40 -1.1 448,981 - Atu0454 0.40 -0.6 449,227 + Atu0454 0.85 -0.9 449,288 - -0.1 449,294 - -0.3 449,342 - -0.2 449,457 + +1.1 449,472 - +0.2 449,525 + -0.5 449,525 + -0.5 449,533 - -0.1 449,533 - -3.6 449,606 - Atu8126 0.13 -0.8 449,622 - Atu8126 0.16 +1.7 449,622 - Atu8126 0.16 +0.7 449,622 - Atu8126 0.16 +0.3 449,775 - Atu8126 0.39 -2.1 449,868 - Atu8126 0.53 +0.3 449,920 + Atu8126 0.60 +0.1 449,930 - Atu8126 0.62 -0.2 449,975 + Atu8126 0.69 -0.8 450,109 + Atu8126 0.89 -0.4 450,110 + Atu8126 0.89 -1.3 450,177 + -0.0 450,179 + -0.7 450,180 - -0.0 450,191 + -1.2 450,192 - +1.6 450,272 + -0.4 450,308 + +1.2
Or see this region's nucleotide sequence