Experiment: toluene 2.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hisB and hisH overlap by 1 nucleotides hisH and hisA overlap by 1 nucleotides hisA and hisF overlap by 19 nucleotides hisF and hisI overlap by 7 nucleotides
b2022: hisB - imidazoleglycerolphosphate dehydratase and histidinol-phosphate phosphatase (VIMSS), at 2,091,492 to 2,092,559
hisB
b2023: hisH - imidazole glycerol phosphate synthase subunit HisH (NCBI), at 2,092,559 to 2,093,149
hisH
b2024: hisA - N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'- phosphoribosyl)-4-imidazolecarboxamide isomerase (VIMSS), at 2,093,149 to 2,093,886
hisA
b2025: hisF - imidazole glycerol phosphate synthase subunit HisF (NCBI), at 2,093,868 to 2,094,644
hisF
b2026: hisI - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein (NCBI), at 2,094,638 to 2,095,249
hisI
Position (kb)
2093
2094 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2092.160 kb on + strand, within hisB at 2092.171 kb on - strand, within hisB at 2092.193 kb on - strand, within hisB at 2092.193 kb on - strand, within hisB at 2092.355 kb on + strand, within hisB at 2092.355 kb on + strand, within hisB at 2092.359 kb on - strand, within hisB at 2092.406 kb on + strand, within hisB at 2092.406 kb on + strand, within hisB at 2092.412 kb on + strand, within hisB at 2092.412 kb on + strand, within hisB at 2092.464 kb on + strand at 2092.533 kb on - strand at 2092.549 kb on - strand at 2092.752 kb on - strand, within hisH at 2092.772 kb on - strand, within hisH at 2092.907 kb on + strand, within hisH at 2093.026 kb on + strand, within hisH at 2093.026 kb on + strand, within hisH at 2093.071 kb on + strand, within hisH at 2093.071 kb on + strand, within hisH at 2093.079 kb on - strand, within hisH at 2093.079 kb on - strand, within hisH at 2093.079 kb on - strand, within hisH at 2093.079 kb on - strand, within hisH at 2093.094 kb on - strand at 2093.183 kb on + strand at 2093.183 kb on + strand at 2093.454 kb on - strand, within hisA at 2093.510 kb on - strand, within hisA at 2093.818 kb on - strand at 2093.818 kb on - strand at 2093.881 kb on + strand at 2093.918 kb on + strand at 2093.978 kb on + strand, within hisF at 2094.236 kb on + strand, within hisF at 2094.236 kb on + strand, within hisF at 2094.236 kb on + strand, within hisF at 2094.244 kb on - strand, within hisF at 2094.244 kb on - strand, within hisF at 2094.248 kb on - strand, within hisF at 2094.338 kb on - strand, within hisF at 2094.596 kb on + strand at 2094.596 kb on + strand at 2094.647 kb on + strand at 2094.712 kb on - strand, within hisI at 2094.712 kb on - strand, within hisI at 2094.716 kb on + strand, within hisI at 2094.869 kb on + strand, within hisI
Per-strain Table
Position Strand Gene LocusTag Fraction toluene 2.5 vol% remove 2,092,160 + hisB b2022 0.63 -0.9 2,092,171 - hisB b2022 0.64 -0.2 2,092,193 - hisB b2022 0.66 -0.3 2,092,193 - hisB b2022 0.66 -3.0 2,092,355 + hisB b2022 0.81 +0.2 2,092,355 + hisB b2022 0.81 -0.7 2,092,359 - hisB b2022 0.81 +0.6 2,092,406 + hisB b2022 0.86 -0.1 2,092,406 + hisB b2022 0.86 +0.9 2,092,412 + hisB b2022 0.86 -0.5 2,092,412 + hisB b2022 0.86 -1.0 2,092,464 + +0.3 2,092,533 - -0.3 2,092,549 - -2.4 2,092,752 - hisH b2023 0.33 +0.5 2,092,772 - hisH b2023 0.36 -0.0 2,092,907 + hisH b2023 0.59 +0.2 2,093,026 + hisH b2023 0.79 +0.8 2,093,026 + hisH b2023 0.79 +0.1 2,093,071 + hisH b2023 0.87 +1.6 2,093,071 + hisH b2023 0.87 -3.3 2,093,079 - hisH b2023 0.88 -0.4 2,093,079 - hisH b2023 0.88 -0.1 2,093,079 - hisH b2023 0.88 -0.3 2,093,079 - hisH b2023 0.88 -0.1 2,093,094 - -0.4 2,093,183 + +0.4 2,093,183 + -0.2 2,093,454 - hisA b2024 0.41 +1.6 2,093,510 - hisA b2024 0.49 -0.1 2,093,818 - -0.9 2,093,818 - +1.0 2,093,881 + -2.6 2,093,918 + +0.9 2,093,978 + hisF b2025 0.14 +1.8 2,094,236 + hisF b2025 0.47 -0.3 2,094,236 + hisF b2025 0.47 -3.2 2,094,236 + hisF b2025 0.47 +0.5 2,094,244 - hisF b2025 0.48 +0.2 2,094,244 - hisF b2025 0.48 +0.7 2,094,248 - hisF b2025 0.49 -2.0 2,094,338 - hisF b2025 0.60 +1.0 2,094,596 + -0.5 2,094,596 + +0.2 2,094,647 + -2.2 2,094,712 - hisI b2026 0.12 +0.7 2,094,712 - hisI b2026 0.12 +0.6 2,094,716 + hisI b2026 0.13 +1.0 2,094,869 + hisI b2026 0.38 -1.7
Or see this region's nucleotide sequence