Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF957

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF955 and GFF956 are separated by 216 nucleotidesGFF956 and GFF957 are separated by 27 nucleotidesGFF957 and GFF1137 are separated by 222 nucleotides GFF955 - L-idonate 5-dehydrogenase (EC 1.1.1.264), at 131,315 to 132,346 GFF955 GFF956 - Gluconokinase (EC 2.7.1.12), at 132,563 to 133,093 GFF956 GFF957 - Alcohol dehydrogenase (EC 1.1.1.1), at 133,121 to 134,140 GFF957 GFF1137 - tRNA-Leu-CAA, at 134,363 to 134,447 GFF1137 Position (kb) 133 134 135Strain fitness (log2 ratio) -1 0 1at 132.406 kb on - strandat 132.417 kb on - strandat 132.844 kb on + strand, within GFF956at 132.862 kb on - strand, within GFF956at 132.888 kb on - strand, within GFF956at 132.896 kb on - strand, within GFF956at 132.932 kb on - strand, within GFF956at 133.016 kb on - strand, within GFF956at 133.059 kb on + strandat 133.136 kb on + strandat 133.269 kb on + strand, within GFF957at 133.269 kb on + strand, within GFF957at 133.381 kb on - strand, within GFF957at 133.399 kb on - strand, within GFF957at 133.399 kb on - strand, within GFF957at 133.432 kb on + strand, within GFF957at 133.645 kb on + strand, within GFF957at 133.645 kb on + strand, within GFF957at 133.646 kb on - strand, within GFF957at 133.646 kb on - strand, within GFF957at 133.676 kb on - strand, within GFF957at 133.676 kb on - strand, within GFF957at 133.689 kb on - strand, within GFF957at 133.689 kb on - strand, within GFF957at 133.712 kb on - strand, within GFF957at 133.715 kb on + strand, within GFF957at 133.716 kb on - strand, within GFF957at 133.716 kb on - strand, within GFF957at 133.817 kb on - strand, within GFF957at 133.906 kb on + strand, within GFF957at 134.080 kb on - strandat 134.295 kb on + strandat 134.296 kb on - strandat 134.329 kb on - strandat 134.329 kb on - strandat 134.717 kb on + strandat 134.718 kb on - strandat 134.877 kb on + strandat 134.878 kb on - strandat 134.878 kb on - strandat 134.888 kb on - strandat 135.133 kb on - strandat 135.134 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI
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132,406 - +0.0
132,417 - -0.5
132,844 + GFF956 0.53 -1.2
132,862 - GFF956 0.56 -1.7
132,888 - GFF956 0.61 +0.3
132,896 - GFF956 0.63 -0.1
132,932 - GFF956 0.69 -0.0
133,016 - GFF956 0.85 -0.2
133,059 + -1.2
133,136 + +0.3
133,269 + GFF957 0.15 +0.8
133,269 + GFF957 0.15 +0.5
133,381 - GFF957 0.25 +0.0
133,399 - GFF957 0.27 +0.2
133,399 - GFF957 0.27 -0.9
133,432 + GFF957 0.30 +0.0
133,645 + GFF957 0.51 -0.3
133,645 + GFF957 0.51 +0.5
133,646 - GFF957 0.51 -0.5
133,646 - GFF957 0.51 -0.9
133,676 - GFF957 0.54 +0.9
133,676 - GFF957 0.54 +0.1
133,689 - GFF957 0.56 -0.1
133,689 - GFF957 0.56 -0.1
133,712 - GFF957 0.58 -0.7
133,715 + GFF957 0.58 -1.0
133,716 - GFF957 0.58 +0.0
133,716 - GFF957 0.58 +0.4
133,817 - GFF957 0.68 +1.0
133,906 + GFF957 0.77 -0.4
134,080 - +0.4
134,295 + +0.6
134,296 - +1.1
134,329 - +1.7
134,329 - +1.5
134,717 + +0.3
134,718 - +0.3
134,877 + -1.5
134,878 - +0.2
134,878 - +0.2
134,888 - +0.7
135,133 - +0.6
135,134 + -0.1

Or see this region's nucleotide sequence