Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF912

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF910 and GFF911 are separated by 11 nucleotidesGFF911 and GFF912 are separated by 58 nucleotidesGFF912 and GFF913 overlap by 17 nucleotides GFF910 - Putative inner membrane protein, at 88,329 to 89,105 GFF910 GFF911 - Putative inner membrane protein, at 89,117 to 89,761 GFF911 GFF912 - Metallo-dependent hydrolases, subgroup B, at 89,820 to 90,953 GFF912 GFF913 - D-Glucosaminate-6-phosphate ammonia-lyase (EC 4.3.1.-), at 90,937 to 92,055 GFF913 Position (kb) 89 90 91Strain fitness (log2 ratio) -2 -1 0 1 2at 88.928 kb on + strand, within GFF910at 89.207 kb on - strand, within GFF911at 89.210 kb on + strand, within GFF911at 89.211 kb on - strand, within GFF911at 89.213 kb on + strand, within GFF911at 89.213 kb on + strand, within GFF911at 89.213 kb on + strand, within GFF911at 89.213 kb on + strand, within GFF911at 89.213 kb on + strand, within GFF911at 89.213 kb on + strand, within GFF911at 89.214 kb on - strand, within GFF911at 89.214 kb on - strand, within GFF911at 89.219 kb on + strand, within GFF911at 89.237 kb on - strand, within GFF911at 89.498 kb on + strand, within GFF911at 89.518 kb on + strand, within GFF911at 89.678 kb on + strand, within GFF911at 89.678 kb on + strand, within GFF911at 89.679 kb on - strand, within GFF911at 89.679 kb on - strand, within GFF911at 89.679 kb on - strand, within GFF911at 89.759 kb on + strandat 89.759 kb on + strandat 89.830 kb on + strandat 89.830 kb on + strandat 89.870 kb on + strandat 89.871 kb on - strandat 89.873 kb on + strandat 89.874 kb on - strandat 90.096 kb on - strand, within GFF912at 90.142 kb on - strand, within GFF912at 90.173 kb on + strand, within GFF912at 90.174 kb on - strand, within GFF912at 90.254 kb on + strand, within GFF912at 90.367 kb on + strand, within GFF912at 90.367 kb on + strand, within GFF912at 90.368 kb on - strand, within GFF912at 90.368 kb on - strand, within GFF912at 90.371 kb on + strand, within GFF912at 90.371 kb on + strand, within GFF912at 90.372 kb on - strand, within GFF912at 90.372 kb on - strand, within GFF912at 90.372 kb on - strand, within GFF912at 90.585 kb on - strand, within GFF912at 90.605 kb on + strand, within GFF912at 90.605 kb on + strand, within GFF912at 90.606 kb on - strand, within GFF912at 90.625 kb on - strand, within GFF912at 90.625 kb on - strand, within GFF912at 90.665 kb on + strand, within GFF912at 90.806 kb on + strand, within GFF912at 90.807 kb on - strand, within GFF912at 90.813 kb on - strand, within GFF912at 90.856 kb on + strandat 90.856 kb on + strandat 90.857 kb on - strandat 90.909 kb on + strandat 91.103 kb on - strand, within GFF913at 91.227 kb on + strand, within GFF913at 91.228 kb on - strand, within GFF913at 91.381 kb on - strand, within GFF913at 91.405 kb on + strand, within GFF913at 91.405 kb on + strand, within GFF913at 91.405 kb on + strand, within GFF913at 91.408 kb on - strand, within GFF913at 91.427 kb on + strand, within GFF913at 91.480 kb on - strand, within GFF913at 91.554 kb on + strand, within GFF913at 91.558 kb on + strand, within GFF913at 91.632 kb on - strand, within GFF913at 91.752 kb on - strand, within GFF913at 91.811 kb on + strand, within GFF913at 91.921 kb on + strand, within GFF913at 91.930 kb on + strand, within GFF913at 91.931 kb on - strand, within GFF913

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI
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88,928 + GFF910 0.77 -0.5
89,207 - GFF911 0.14 -0.1
89,210 + GFF911 0.14 +0.1
89,211 - GFF911 0.15 +2.3
89,213 + GFF911 0.15 -1.6
89,213 + GFF911 0.15 -0.5
89,213 + GFF911 0.15 +0.0
89,213 + GFF911 0.15 -1.2
89,213 + GFF911 0.15 +0.2
89,213 + GFF911 0.15 +0.9
89,214 - GFF911 0.15 +0.2
89,214 - GFF911 0.15 +0.4
89,219 + GFF911 0.16 -1.4
89,237 - GFF911 0.19 +0.3
89,498 + GFF911 0.59 +0.3
89,518 + GFF911 0.62 +0.3
89,678 + GFF911 0.87 +0.1
89,678 + GFF911 0.87 -0.0
89,679 - GFF911 0.87 +0.1
89,679 - GFF911 0.87 +0.9
89,679 - GFF911 0.87 -0.5
89,759 + +1.5
89,759 + +0.1
89,830 + -0.2
89,830 + +0.6
89,870 + -0.1
89,871 - -0.1
89,873 + -0.1
89,874 - -0.7
90,096 - GFF912 0.24 -0.1
90,142 - GFF912 0.28 +0.3
90,173 + GFF912 0.31 +0.7
90,174 - GFF912 0.31 -0.1
90,254 + GFF912 0.38 +0.6
90,367 + GFF912 0.48 +0.2
90,367 + GFF912 0.48 +0.1
90,368 - GFF912 0.48 +0.2
90,368 - GFF912 0.48 -0.0
90,371 + GFF912 0.49 -1.2
90,371 + GFF912 0.49 -1.0
90,372 - GFF912 0.49 +0.4
90,372 - GFF912 0.49 -0.4
90,372 - GFF912 0.49 +0.0
90,585 - GFF912 0.67 +1.2
90,605 + GFF912 0.69 -1.2
90,605 + GFF912 0.69 -0.5
90,606 - GFF912 0.69 -0.0
90,625 - GFF912 0.71 +0.3
90,625 - GFF912 0.71 -1.1
90,665 + GFF912 0.75 +0.1
90,806 + GFF912 0.87 -1.1
90,807 - GFF912 0.87 +0.8
90,813 - GFF912 0.88 -0.3
90,856 + +0.9
90,856 + -0.0
90,857 - -2.1
90,909 + -0.3
91,103 - GFF913 0.15 +0.6
91,227 + GFF913 0.26 -0.0
91,228 - GFF913 0.26 -0.7
91,381 - GFF913 0.40 -0.5
91,405 + GFF913 0.42 +0.1
91,405 + GFF913 0.42 +0.1
91,405 + GFF913 0.42 +0.0
91,408 - GFF913 0.42 +0.2
91,427 + GFF913 0.44 +0.1
91,480 - GFF913 0.49 -0.6
91,554 + GFF913 0.55 -1.8
91,558 + GFF913 0.55 +0.1
91,632 - GFF913 0.62 -1.4
91,752 - GFF913 0.73 +0.4
91,811 + GFF913 0.78 +0.3
91,921 + GFF913 0.88 -0.3
91,930 + GFF913 0.89 +0.1
91,931 - GFF913 0.89 -1.2

Or see this region's nucleotide sequence