Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF874

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF872 and GFF873 are separated by 54 nucleotidesGFF873 and GFF874 are separated by 41 nucleotidesGFF874 and GFF875 overlap by 4 nucleotides GFF872 - Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11), at 48,551 to 49,189 GFF872 GFF873 - hypothetical protein, at 49,244 to 49,360 GFF873 GFF874 - Uncharacterized protein YtfM precursor, at 49,402 to 51,135 GFF874 GFF875 - Uncharacterized protein YtfN, at 51,132 to 54,911 GFF875 Position (kb) 49 50 51 52Strain fitness (log2 ratio) -1 0 1at 48.409 kb on + strandat 48.410 kb on - strandat 48.412 kb on - strandat 48.474 kb on + strandat 48.484 kb on + strandat 48.485 kb on - strandat 48.485 kb on - strandat 48.485 kb on - strandat 48.490 kb on - strandat 48.494 kb on + strandat 48.538 kb on + strandat 48.649 kb on - strand, within GFF872at 48.806 kb on - strand, within GFF872at 48.888 kb on + strand, within GFF872at 48.888 kb on + strand, within GFF872at 48.889 kb on - strand, within GFF872at 48.988 kb on + strand, within GFF872at 48.988 kb on + strand, within GFF872at 48.989 kb on - strand, within GFF872at 48.989 kb on - strand, within GFF872at 48.992 kb on + strand, within GFF872at 48.992 kb on + strand, within GFF872at 49.051 kb on - strand, within GFF872at 49.085 kb on - strand, within GFF872at 49.212 kb on - strandat 49.285 kb on - strand, within GFF873at 49.421 kb on + strandat 49.626 kb on - strand, within GFF874at 49.680 kb on - strand, within GFF874at 49.769 kb on - strand, within GFF874at 49.769 kb on - strand, within GFF874at 49.778 kb on + strand, within GFF874at 49.893 kb on + strand, within GFF874at 49.948 kb on + strand, within GFF874at 50.015 kb on - strand, within GFF874at 50.109 kb on + strand, within GFF874at 50.281 kb on + strand, within GFF874at 50.347 kb on - strand, within GFF874at 50.383 kb on + strand, within GFF874at 50.403 kb on + strand, within GFF874at 50.545 kb on - strand, within GFF874at 50.645 kb on - strand, within GFF874at 50.719 kb on + strand, within GFF874at 50.763 kb on - strand, within GFF874at 50.917 kb on + strand, within GFF874at 50.925 kb on + strand, within GFF874at 50.926 kb on - strand, within GFF874at 50.938 kb on - strand, within GFF874at 51.110 kb on - strandat 51.139 kb on + strandat 51.305 kb on - strandat 51.431 kb on + strandat 51.582 kb on - strand, within GFF875at 51.929 kb on + strand, within GFF875at 51.929 kb on + strand, within GFF875at 51.929 kb on + strand, within GFF875at 51.930 kb on - strand, within GFF875at 52.023 kb on - strand, within GFF875

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI
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48,409 + +0.1
48,410 - -0.1
48,412 - -0.0
48,474 + +0.7
48,484 + +0.3
48,485 - +0.1
48,485 - -0.1
48,485 - +0.1
48,490 - +0.0
48,494 + +0.2
48,538 + +0.0
48,649 - GFF872 0.15 -0.0
48,806 - GFF872 0.40 +0.4
48,888 + GFF872 0.53 -0.3
48,888 + GFF872 0.53 +0.3
48,889 - GFF872 0.53 +0.0
48,988 + GFF872 0.68 -0.1
48,988 + GFF872 0.68 +0.4
48,989 - GFF872 0.69 -0.1
48,989 - GFF872 0.69 +0.2
48,992 + GFF872 0.69 -0.5
48,992 + GFF872 0.69 -0.6
49,051 - GFF872 0.78 +0.2
49,085 - GFF872 0.84 +0.0
49,212 - -0.6
49,285 - GFF873 0.35 -1.6
49,421 + -0.6
49,626 - GFF874 0.13 +0.3
49,680 - GFF874 0.16 +1.6
49,769 - GFF874 0.21 -0.1
49,769 - GFF874 0.21 +0.9
49,778 + GFF874 0.22 +1.7
49,893 + GFF874 0.28 +1.3
49,948 + GFF874 0.31 +0.3
50,015 - GFF874 0.35 +0.4
50,109 + GFF874 0.41 +0.2
50,281 + GFF874 0.51 +0.2
50,347 - GFF874 0.54 +0.1
50,383 + GFF874 0.57 -0.1
50,403 + GFF874 0.58 -0.0
50,545 - GFF874 0.66 -0.6
50,645 - GFF874 0.72 +0.5
50,719 + GFF874 0.76 +0.4
50,763 - GFF874 0.78 +0.2
50,917 + GFF874 0.87 -1.6
50,925 + GFF874 0.88 -0.2
50,926 - GFF874 0.88 +0.3
50,938 - GFF874 0.89 +0.6
51,110 - +0.1
51,139 + +0.5
51,305 - +0.3
51,431 + +0.1
51,582 - GFF875 0.12 +0.4
51,929 + GFF875 0.21 +0.5
51,929 + GFF875 0.21 +1.1
51,929 + GFF875 0.21 +0.2
51,930 - GFF875 0.21 +0.5
52,023 - GFF875 0.24 -0.0

Or see this region's nucleotide sequence