Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF756

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF754 and GFF755 overlap by 17 nucleotidesGFF755 and GFF756 are separated by 57 nucleotidesGFF756 and GFF757 are separated by 96 nucleotidesGFF757 and GFF758 are separated by 345 nucleotides GFF754 - YbjC protein, clustered with oxygen-insensitive NADPH nitroreductase, at 112,571 to 112,861 GFF754 GFF755 - Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-), at 112,845 to 113,567 GFF755 GFF756 - Ribosomal protein S6 glutaminyl transferase, at 113,625 to 114,527 GFF756 GFF757 - putative sensory transduction regulator, at 114,624 to 115,100 GFF757 GFF758 - Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2), at 115,446 to 116,561 GFF758 Position (kb) 113 114 115Strain fitness (log2 ratio) -2 -1 0 1at 112.670 kb on - strand, within GFF754at 112.707 kb on + strand, within GFF754at 112.707 kb on + strand, within GFF754at 112.934 kb on + strand, within GFF755at 112.986 kb on - strand, within GFF755at 113.227 kb on - strand, within GFF755at 113.291 kb on - strand, within GFF755at 113.439 kb on + strand, within GFF755at 113.443 kb on - strand, within GFF755at 113.443 kb on - strand, within GFF755at 113.460 kb on - strand, within GFF755at 113.536 kb on - strandat 113.536 kb on - strandat 113.566 kb on - strandat 113.584 kb on + strandat 113.717 kb on - strand, within GFF756at 113.717 kb on - strand, within GFF756at 113.737 kb on - strand, within GFF756at 113.739 kb on - strand, within GFF756at 113.748 kb on - strand, within GFF756at 113.772 kb on + strand, within GFF756at 113.832 kb on - strand, within GFF756at 113.839 kb on - strand, within GFF756at 113.839 kb on - strand, within GFF756at 113.907 kb on - strand, within GFF756at 114.015 kb on - strand, within GFF756at 114.159 kb on + strand, within GFF756at 114.159 kb on + strand, within GFF756at 114.160 kb on - strand, within GFF756at 114.173 kb on + strand, within GFF756at 114.613 kb on - strandat 114.623 kb on + strandat 114.653 kb on + strandat 114.654 kb on - strandat 114.753 kb on + strand, within GFF757at 114.937 kb on + strand, within GFF757at 115.098 kb on + strandat 115.296 kb on + strandat 115.375 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI
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112,670 - GFF754 0.34 -0.5
112,707 + GFF754 0.47 +0.3
112,707 + GFF754 0.47 -0.3
112,934 + GFF755 0.12 +0.6
112,986 - GFF755 0.20 -1.3
113,227 - GFF755 0.53 +0.2
113,291 - GFF755 0.62 +0.8
113,439 + GFF755 0.82 +0.4
113,443 - GFF755 0.83 +0.4
113,443 - GFF755 0.83 -0.9
113,460 - GFF755 0.85 +0.7
113,536 - +0.4
113,536 - -0.9
113,566 - +0.1
113,584 + +0.7
113,717 - GFF756 0.10 -0.2
113,717 - GFF756 0.10 -1.9
113,737 - GFF756 0.12 +0.9
113,739 - GFF756 0.13 -0.5
113,748 - GFF756 0.14 -0.5
113,772 + GFF756 0.16 -0.7
113,832 - GFF756 0.23 -0.2
113,839 - GFF756 0.24 -1.3
113,839 - GFF756 0.24 -0.8
113,907 - GFF756 0.31 -0.2
114,015 - GFF756 0.43 -0.5
114,159 + GFF756 0.59 +1.2
114,159 + GFF756 0.59 -0.1
114,160 - GFF756 0.59 -0.9
114,173 + GFF756 0.61 +0.7
114,613 - -0.5
114,623 + -0.5
114,653 + +0.0
114,654 - -1.0
114,753 + GFF757 0.27 -0.7
114,937 + GFF757 0.66 -0.6
115,098 + +0.0
115,296 + +0.6
115,375 - +0.6

Or see this region's nucleotide sequence