Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4893

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4892 and GFF4893 are separated by 545 nucleotidesGFF4893 and GFF4894 are separated by 77 nucleotides GFF4892 - Thioredoxin reductase (EC 1.8.1.9), at 9,550 to 10,518 GFF4892 GFF4893 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 11,064 to 11,558 GFF4893 GFF4894 - Cell division protein FtsK, at 11,636 to 15,670 GFF4894 Position (kb) 11 12Strain fitness (log2 ratio) -1 0 1 2 3at 10.072 kb on + strand, within GFF4892at 10.163 kb on + strand, within GFF4892at 10.417 kb on - strand, within GFF4892at 10.448 kb on + strandat 10.530 kb on - strandat 10.575 kb on + strandat 10.612 kb on + strandat 10.615 kb on + strandat 10.615 kb on + strandat 10.615 kb on + strandat 10.813 kb on + strandat 10.828 kb on + strandat 10.840 kb on + strandat 10.871 kb on + strandat 11.020 kb on - strandat 11.035 kb on + strandat 11.060 kb on - strandat 11.060 kb on - strandat 11.062 kb on + strandat 11.062 kb on + strandat 11.063 kb on - strandat 11.069 kb on - strandat 11.072 kb on + strandat 11.123 kb on + strand, within GFF4893at 11.123 kb on + strand, within GFF4893at 11.147 kb on + strand, within GFF4893at 11.147 kb on + strand, within GFF4893at 11.147 kb on + strand, within GFF4893at 11.168 kb on + strand, within GFF4893at 11.234 kb on + strand, within GFF4893at 11.268 kb on + strand, within GFF4893at 11.343 kb on - strand, within GFF4893at 11.406 kb on + strand, within GFF4893at 11.426 kb on - strand, within GFF4893at 11.502 kb on + strand, within GFF4893at 11.506 kb on + strand, within GFF4893at 11.546 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI
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10,072 + GFF4892 0.54 +1.8
10,163 + GFF4892 0.63 +0.2
10,417 - GFF4892 0.89 +2.0
10,448 + +3.1
10,530 - +1.6
10,575 + +2.1
10,612 + -0.6
10,615 + -0.4
10,615 + -0.3
10,615 + -1.6
10,813 + -0.3
10,828 + -0.1
10,840 + +0.8
10,871 + +0.0
11,020 - +1.0
11,035 + +0.5
11,060 - +0.6
11,060 - +1.3
11,062 + +0.7
11,062 + +1.2
11,063 - +1.1
11,069 - +2.4
11,072 + +0.5
11,123 + GFF4893 0.12 +0.8
11,123 + GFF4893 0.12 -0.5
11,147 + GFF4893 0.17 +0.6
11,147 + GFF4893 0.17 +0.8
11,147 + GFF4893 0.17 +0.6
11,168 + GFF4893 0.21 +1.0
11,234 + GFF4893 0.34 +0.9
11,268 + GFF4893 0.41 +1.1
11,343 - GFF4893 0.56 +1.3
11,406 + GFF4893 0.69 +0.9
11,426 - GFF4893 0.73 +0.8
11,502 + GFF4893 0.88 +1.0
11,506 + GFF4893 0.89 +0.9
11,546 + -0.4

Or see this region's nucleotide sequence