Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4393

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4391 and GFF4392 are separated by 240 nucleotidesGFF4392 and GFF4393 are separated by 78 nucleotidesGFF4393 and GFF4394 are separated by 9 nucleotidesGFF4394 and GFF4395 overlap by 4 nucleotides GFF4391 - Chaperone protein HtpG, at 174,140 to 176,014 GFF4391 GFF4392 - Adenylate kinase (EC 2.7.4.3), at 176,255 to 176,899 GFF4392 GFF4393 - Adenylate kinase (EC 2.7.4.3), at 176,978 to 177,118 GFF4393 GFF4394 - Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1), at 177,128 to 178,090 GFF4394 GFF4395 - Acetyl esterase (EC 3.1.1.-), at 178,087 to 179,058 GFF4395 Position (kb) 176 177 178Strain fitness (log2 ratio) -1 0 1at 176.124 kb on - strandat 177.116 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI
remove
176,124 - +0.4
177,116 + -0.4

Or see this region's nucleotide sequence