Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3911

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3910 and GFF3911 overlap by 4 nucleotidesGFF3911 and GFF3912 overlap by 4 nucleotides GFF3910 - Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19), at 190,792 to 191,859 GFF3910 GFF3911 - Histidinol-phosphate aminotransferase (EC 2.6.1.9), at 191,856 to 192,935 GFF3911 GFF3912 - Histidinol dehydrogenase (EC 1.1.1.23), at 192,932 to 194,236 GFF3912 Position (kb) 191 192 193Strain fitness (log2 ratio) -3 -2 -1 0 1at 191.005 kb on - strand, within GFF3910at 191.016 kb on + strand, within GFF3910at 191.164 kb on + strand, within GFF3910at 191.187 kb on - strand, within GFF3910at 191.187 kb on - strand, within GFF3910at 191.187 kb on - strand, within GFF3910at 191.697 kb on + strand, within GFF3910at 191.938 kb on - strandat 192.029 kb on + strand, within GFF3911at 192.029 kb on + strand, within GFF3911at 192.216 kb on + strand, within GFF3911at 192.367 kb on + strand, within GFF3911at 192.368 kb on - strand, within GFF3911at 192.368 kb on - strand, within GFF3911at 192.441 kb on - strand, within GFF3911at 192.441 kb on - strand, within GFF3911at 192.441 kb on - strand, within GFF3911at 192.467 kb on + strand, within GFF3911at 192.562 kb on - strand, within GFF3911at 192.590 kb on - strand, within GFF3911at 192.770 kb on + strand, within GFF3911at 193.109 kb on - strand, within GFF3912at 193.116 kb on + strand, within GFF3912at 193.117 kb on - strand, within GFF3912at 193.123 kb on - strand, within GFF3912at 193.123 kb on - strand, within GFF3912at 193.155 kb on + strand, within GFF3912at 193.253 kb on + strand, within GFF3912at 193.269 kb on + strand, within GFF3912at 193.848 kb on + strand, within GFF3912at 193.848 kb on + strand, within GFF3912at 193.849 kb on - strand, within GFF3912

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI
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191,005 - GFF3910 0.20 +0.1
191,016 + GFF3910 0.21 -0.2
191,164 + GFF3910 0.35 +0.4
191,187 - GFF3910 0.37 -1.0
191,187 - GFF3910 0.37 -0.3
191,187 - GFF3910 0.37 +0.7
191,697 + GFF3910 0.85 +0.0
191,938 - -3.3
192,029 + GFF3911 0.16 +0.0
192,029 + GFF3911 0.16 -1.0
192,216 + GFF3911 0.33 -0.6
192,367 + GFF3911 0.47 -1.0
192,368 - GFF3911 0.47 -0.0
192,368 - GFF3911 0.47 -1.5
192,441 - GFF3911 0.54 -1.7
192,441 - GFF3911 0.54 -1.8
192,441 - GFF3911 0.54 -1.8
192,467 + GFF3911 0.57 -0.7
192,562 - GFF3911 0.65 -1.7
192,590 - GFF3911 0.68 -1.1
192,770 + GFF3911 0.85 -1.1
193,109 - GFF3912 0.14 +0.0
193,116 + GFF3912 0.14 -0.2
193,117 - GFF3912 0.14 -0.1
193,123 - GFF3912 0.15 -0.3
193,123 - GFF3912 0.15 +0.1
193,155 + GFF3912 0.17 -0.3
193,253 + GFF3912 0.25 +0.4
193,269 + GFF3912 0.26 +0.1
193,848 + GFF3912 0.70 -1.1
193,848 + GFF3912 0.70 +0.1
193,849 - GFF3912 0.70 -0.1

Or see this region's nucleotide sequence