Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3859

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3857 and GFF3858 are separated by 133 nucleotidesGFF3858 and GFF3859 overlap by 33 nucleotidesGFF3859 and GFF3860 are separated by 78 nucleotidesGFF3860 and GFF3861 are separated by 75 nucleotides GFF3857 - Putative heat shock protein YegD, at 131,009 to 132,361 GFF3857 GFF3858 - DNA-3-methyladenine glycosylase II (EC 3.2.2.21), at 132,495 to 133,364 GFF3858 GFF3859 - FIG00509877: hypothetical protein, at 133,332 to 136,328 GFF3859 GFF3860 - FIG01045963: hypothetical protein, at 136,407 to 136,577 GFF3860 GFF3861 - Uridine kinase (EC 2.7.1.48) [C1], at 136,653 to 137,294 GFF3861 Position (kb) 133 134 135 136 137Strain fitness (log2 ratio) -1 0 1at 132.365 kb on - strandat 132.465 kb on - strandat 132.522 kb on + strandat 132.694 kb on + strand, within GFF3858at 132.830 kb on + strand, within GFF3858at 132.830 kb on + strand, within GFF3858at 133.217 kb on + strand, within GFF3858at 133.291 kb on - strandat 133.348 kb on + strandat 133.422 kb on - strandat 133.576 kb on + strandat 133.600 kb on - strandat 133.731 kb on + strand, within GFF3859at 133.731 kb on + strand, within GFF3859at 133.732 kb on - strand, within GFF3859at 133.799 kb on - strand, within GFF3859at 134.069 kb on + strand, within GFF3859at 134.069 kb on + strand, within GFF3859at 134.069 kb on + strand, within GFF3859at 134.216 kb on + strand, within GFF3859at 134.217 kb on - strand, within GFF3859at 134.217 kb on - strand, within GFF3859at 134.227 kb on - strand, within GFF3859at 134.307 kb on - strand, within GFF3859at 134.340 kb on - strand, within GFF3859at 134.343 kb on - strand, within GFF3859at 134.443 kb on - strand, within GFF3859at 134.718 kb on - strand, within GFF3859at 134.808 kb on - strand, within GFF3859at 134.829 kb on - strand, within GFF3859at 134.859 kb on + strand, within GFF3859at 134.922 kb on - strand, within GFF3859at 134.949 kb on - strand, within GFF3859at 135.030 kb on - strand, within GFF3859at 135.032 kb on + strand, within GFF3859at 135.107 kb on - strand, within GFF3859at 135.181 kb on + strand, within GFF3859at 135.182 kb on - strand, within GFF3859at 135.182 kb on - strand, within GFF3859at 135.185 kb on - strand, within GFF3859at 135.202 kb on + strand, within GFF3859at 135.203 kb on - strand, within GFF3859at 135.203 kb on - strand, within GFF3859at 135.203 kb on - strand, within GFF3859at 135.234 kb on + strand, within GFF3859at 135.521 kb on + strand, within GFF3859at 135.522 kb on - strand, within GFF3859at 135.689 kb on + strand, within GFF3859at 135.689 kb on + strand, within GFF3859at 135.691 kb on + strand, within GFF3859at 135.691 kb on + strand, within GFF3859at 135.781 kb on + strand, within GFF3859at 135.781 kb on + strand, within GFF3859at 135.799 kb on - strand, within GFF3859at 135.844 kb on - strand, within GFF3859at 135.897 kb on + strand, within GFF3859at 135.979 kb on + strand, within GFF3859at 136.035 kb on + strandat 136.218 kb on + strandat 136.276 kb on - strandat 136.324 kb on - strandat 136.388 kb on - strandat 136.388 kb on - strandat 136.393 kb on - strandat 136.393 kb on - strandat 136.396 kb on - strandat 136.430 kb on + strand, within GFF3860at 136.586 kb on + strandat 136.623 kb on + strandat 136.623 kb on + strandat 136.623 kb on + strandat 136.624 kb on - strandat 136.797 kb on + strand, within GFF3861at 136.800 kb on + strand, within GFF3861at 136.801 kb on - strand, within GFF3861at 136.848 kb on + strand, within GFF3861at 136.849 kb on - strand, within GFF3861at 136.935 kb on + strand, within GFF3861at 136.935 kb on + strand, within GFF3861at 136.936 kb on - strand, within GFF3861at 136.941 kb on + strand, within GFF3861at 136.942 kb on - strand, within GFF3861at 136.997 kb on + strand, within GFF3861at 137.009 kb on + strand, within GFF3861at 137.209 kb on - strand, within GFF3861at 137.217 kb on - strand, within GFF3861

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI
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132,365 - +0.2
132,465 - +0.6
132,522 + -0.4
132,694 + GFF3858 0.23 +0.2
132,830 + GFF3858 0.39 +0.3
132,830 + GFF3858 0.39 +0.5
133,217 + GFF3858 0.83 -0.0
133,291 - -0.5
133,348 + -0.2
133,422 - -0.1
133,576 + +0.0
133,600 - -0.3
133,731 + GFF3859 0.13 -0.7
133,731 + GFF3859 0.13 +0.2
133,732 - GFF3859 0.13 -0.2
133,799 - GFF3859 0.16 -1.0
134,069 + GFF3859 0.25 -0.5
134,069 + GFF3859 0.25 -1.3
134,069 + GFF3859 0.25 -0.8
134,216 + GFF3859 0.29 +0.1
134,217 - GFF3859 0.30 +0.3
134,217 - GFF3859 0.30 -0.3
134,227 - GFF3859 0.30 -0.3
134,307 - GFF3859 0.33 -0.5
134,340 - GFF3859 0.34 -0.5
134,343 - GFF3859 0.34 +0.2
134,443 - GFF3859 0.37 +0.1
134,718 - GFF3859 0.46 -0.1
134,808 - GFF3859 0.49 -1.5
134,829 - GFF3859 0.50 -0.5
134,859 + GFF3859 0.51 +0.4
134,922 - GFF3859 0.53 -0.4
134,949 - GFF3859 0.54 -0.5
135,030 - GFF3859 0.57 -0.1
135,032 + GFF3859 0.57 +0.6
135,107 - GFF3859 0.59 -0.1
135,181 + GFF3859 0.62 +0.6
135,182 - GFF3859 0.62 -1.3
135,182 - GFF3859 0.62 -0.3
135,185 - GFF3859 0.62 -0.1
135,202 + GFF3859 0.62 +0.2
135,203 - GFF3859 0.62 +0.4
135,203 - GFF3859 0.62 -0.1
135,203 - GFF3859 0.62 -1.0
135,234 + GFF3859 0.63 -0.8
135,521 + GFF3859 0.73 -0.6
135,522 - GFF3859 0.73 -0.1
135,689 + GFF3859 0.79 +0.8
135,689 + GFF3859 0.79 +0.4
135,691 + GFF3859 0.79 -1.0
135,691 + GFF3859 0.79 +0.3
135,781 + GFF3859 0.82 -0.1
135,781 + GFF3859 0.82 +0.4
135,799 - GFF3859 0.82 -0.1
135,844 - GFF3859 0.84 +0.9
135,897 + GFF3859 0.86 -0.5
135,979 + GFF3859 0.88 +0.4
136,035 + -0.5
136,218 + -0.3
136,276 - -1.1
136,324 - -0.4
136,388 - -0.2
136,388 - +0.3
136,393 - -0.4
136,393 - -0.5
136,396 - -1.4
136,430 + GFF3860 0.13 +0.9
136,586 + +1.0
136,623 + +0.3
136,623 + +0.2
136,623 + +1.4
136,624 - +0.4
136,797 + GFF3861 0.22 +0.5
136,800 + GFF3861 0.23 +1.0
136,801 - GFF3861 0.23 +1.0
136,848 + GFF3861 0.30 +0.5
136,849 - GFF3861 0.31 +0.6
136,935 + GFF3861 0.44 -0.1
136,935 + GFF3861 0.44 +0.3
136,936 - GFF3861 0.44 +0.4
136,941 + GFF3861 0.45 +0.8
136,942 - GFF3861 0.45 +1.3
136,997 + GFF3861 0.54 -0.7
137,009 + GFF3861 0.55 +0.5
137,209 - GFF3861 0.87 +0.3
137,217 - GFF3861 0.88 +1.0

Or see this region's nucleotide sequence