Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3155

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3152 and GFF3153 overlap by 2 nucleotidesGFF3153 and GFF3154 are separated by 13 nucleotidesGFF3154 and GFF3155 are separated by 66 nucleotidesGFF3155 and GFF3156 are separated by 399 nucleotides GFF3152 - Uncharacterized protein ygiD, at 157,292 to 158,080 GFF3152 GFF3153 - hypothetical protein, at 158,079 to 158,207 GFF3153 GFF3154 - Zinc transporter ZupT, at 158,221 to 158,994 GFF3154 GFF3155 - FIG01045594: hypothetical protein, at 159,061 to 159,237 GFF3155 GFF3156 - Putative arylsulfate sulfotransferase (EC 2.8.2.22), at 159,637 to 160,602 GFF3156 Position (kb) 159 160Strain fitness (log2 ratio) -1 0 1at 158.065 kb on + strandat 158.066 kb on - strandat 158.122 kb on + strand, within GFF3153at 158.123 kb on - strand, within GFF3153at 158.175 kb on + strand, within GFF3153at 158.228 kb on + strandat 158.667 kb on + strand, within GFF3154at 158.829 kb on + strand, within GFF3154at 158.913 kb on + strand, within GFF3154at 158.923 kb on + strandat 158.940 kb on + strandat 159.131 kb on - strand, within GFF3155at 159.212 kb on - strand, within GFF3155at 159.845 kb on + strand, within GFF3156at 159.881 kb on - strand, within GFF3156at 159.919 kb on - strand, within GFF3156at 160.003 kb on + strand, within GFF3156at 160.038 kb on + strand, within GFF3156

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI
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158,065 + +0.2
158,066 - -0.3
158,122 + GFF3153 0.33 -0.0
158,123 - GFF3153 0.34 -0.3
158,175 + GFF3153 0.74 +0.3
158,228 + -1.3
158,667 + GFF3154 0.58 -0.5
158,829 + GFF3154 0.79 +0.0
158,913 + GFF3154 0.89 -0.6
158,923 + +0.3
158,940 + +0.4
159,131 - GFF3155 0.40 +0.6
159,212 - GFF3155 0.85 +0.5
159,845 + GFF3156 0.22 +0.1
159,881 - GFF3156 0.25 +0.7
159,919 - GFF3156 0.29 +1.0
160,003 + GFF3156 0.38 -0.4
160,038 + GFF3156 0.42 -0.5

Or see this region's nucleotide sequence