Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2322

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2320 and GFF2321 are separated by 25 nucleotidesGFF2321 and GFF2322 are separated by 410 nucleotidesGFF2322 and GFF2323 are separated by 264 nucleotides GFF2320 - Putative arylsulfate sulfotransferase (EC 2.8.2.22), at 105,808 to 107,457 GFF2320 GFF2321 - FIG01045707: hypothetical protein, at 107,483 to 107,644 GFF2321 GFF2322 - Methionine repressor MetJ, at 108,055 to 108,372 GFF2322 GFF2323 - Cystathionine gamma-synthase (EC 2.5.1.48), at 108,637 to 109,797 GFF2323 Position (kb) 108 109Strain fitness (log2 ratio) -1 0 1 2 3at 107.086 kb on - strand, within GFF2320at 107.086 kb on - strand, within GFF2320at 107.102 kb on - strand, within GFF2320at 107.145 kb on + strand, within GFF2320at 107.213 kb on + strand, within GFF2320at 107.284 kb on + strand, within GFF2320at 107.284 kb on + strand, within GFF2320at 107.392 kb on - strandat 107.392 kb on - strandat 107.404 kb on - strandat 107.406 kb on + strandat 107.461 kb on + strandat 107.461 kb on + strandat 107.462 kb on - strandat 108.324 kb on + strand, within GFF2322at 108.382 kb on - strandat 108.400 kb on + strandat 108.444 kb on + strandat 108.449 kb on + strandat 108.504 kb on - strandat 108.536 kb on + strandat 108.537 kb on - strandat 108.584 kb on + strandat 108.636 kb on + strandat 108.636 kb on + strandat 108.636 kb on + strandat 108.694 kb on + strandat 108.694 kb on + strandat 108.730 kb on - strandat 108.733 kb on + strandat 108.734 kb on - strandat 108.735 kb on + strandat 108.848 kb on + strand, within GFF2323at 108.949 kb on + strand, within GFF2323at 109.155 kb on + strand, within GFF2323at 109.275 kb on + strand, within GFF2323at 109.347 kb on + strand, within GFF2323at 109.348 kb on - strand, within GFF2323at 109.351 kb on + strand, within GFF2323at 109.352 kb on - strand, within GFF2323at 109.352 kb on - strand, within GFF2323

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI
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107,086 - GFF2320 0.77 +0.6
107,086 - GFF2320 0.77 +0.1
107,102 - GFF2320 0.78 +0.2
107,145 + GFF2320 0.81 -0.1
107,213 + GFF2320 0.85 -0.1
107,284 + GFF2320 0.89 +0.4
107,284 + GFF2320 0.89 +0.5
107,392 - +0.5
107,392 - +0.9
107,404 - +1.2
107,406 + +0.4
107,461 + +0.0
107,461 + -0.1
107,462 - +0.2
108,324 + GFF2322 0.85 +2.3
108,382 - +2.8
108,400 + +2.9
108,444 + +2.8
108,449 + +2.9
108,504 - -1.2
108,536 + +0.7
108,537 - +0.5
108,584 + +0.7
108,636 + +0.3
108,636 + -0.1
108,636 + +0.2
108,694 + -0.1
108,694 + +1.0
108,730 - -1.7
108,733 + -1.1
108,734 - -1.0
108,735 + +1.2
108,848 + GFF2323 0.18 +0.3
108,949 + GFF2323 0.27 -0.7
109,155 + GFF2323 0.45 -0.6
109,275 + GFF2323 0.55 +1.2
109,347 + GFF2323 0.61 +0.3
109,348 - GFF2323 0.61 +1.4
109,351 + GFF2323 0.61 -0.6
109,352 - GFF2323 0.62 +2.1
109,352 - GFF2323 0.62 +1.8

Or see this region's nucleotide sequence